Scaffold Ga0136551_1000342

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000342
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13666
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002071	Metagenome / Metatranscriptome	596	Y
F038205	Metagenome / Metatranscriptome	166	Y
F043387	Metagenome / Metatranscriptome	156	Y
F057310	Metagenome / Metatranscriptome	136	Y
F063685	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100034210	F000450	GGCGG	MGDRANFGFVQSNGNTIVLYGHWAGYNMLGKLADAVIAARPRWNDESYATRIAISQLVADQWNMETGWGMYVNEIGDNEHKIAIVDFNQQTFSLHEEDHRGNEDNKISGMKNDAIFTMDLSTFCEKYAMENILVV*
Ga0136551_100034212	F001043	GGA	MSDYRDGFQDGYKFAREEIIEKLREIDIADIDAYLLDRLSDMIESNKI*
Ga0136551_100034213	F000311	AGAAGG	MYFELTAPNQVAFKRAIWEADIIGLDPQEMQSLTFNIGTGSIEKVSRIRDKHNLVESYVADYEPTGYLRGI*
Ga0136551_100034220	F002071	AGGA	MEIGTTYTTTNSGITGVIKAIDNHPSGVNRILLDVNGTDRWTSVRA*
Ga0136551_100034227	F038205	AGGA	MGNLSEIIGVACDDCGGAGFIFWGDENNYDVESCDCALEMWGI*
Ga0136551_100034228	F000447	N/A	MGYIEIFRLNDEGAGWVDLSEATPAELLDLEIGLFQEGAFD*
Ga0136551_100034230	F001562	GAG	MKSQLEKDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLREEGHIE*
Ga0136551_100034232	F063685	GGAGG	MSEGFFTIEIDNYGFMLDTEWAYIALSWQLLTLTALVVIGYKIYKRKKNK*
Ga0136551_100034233	F043387	AGGA	MMTKWDTIQADISDAYTYLDEQEALDKHNSETLFDEDMISMDEVIEKGLTLDWEEYE*
Ga0136551_100034234	F057310	GAGG	MKITYSIWQGSLMKGHTLTASKMSEVIATIKELNESGLSPKFEAFISKIEQDNN*
Ga0136551_10003429	F000868	AGGA	MSEVSFLENENQMVIDAELQTIAEQLLDDWIYENLNEGQFYADWRIADMVDSNYLKGRFNKHYNLTPTDEYYIEYDEEA*