NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136809_1180639

Scaffold Ga0136809_1180639


Overview

Basic Information
Taxon OID3300010385 Open in IMG/M
Scaffold IDGa0136809_1180639 Open in IMG/M
Source Dataset NameGiant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA . Combined Assembly of Gp0155292, Gp0155293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLeibniz Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Brown Algae → Unclassified → Unclassified → Marine Brown Algae (Kelp) Associated → Giant Kelp Blades Associated Microbial Communities From The Kelp Forest Near Monterey Bay Aquarium, California, Usa

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.619Long. (o)-121.9Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072745Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0136809_11806393F072745GAGMITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV*

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