Scaffold Ga0136449_100011940

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100011940
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23702
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033888	Metagenome / Metatranscriptome	176	Y
F050516	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10001194016	F050516	GAG	VIALLSGTGFAQGASLAALNDDPLSFAAANLGPANPGAVTPSPMIANTLPEAPSQHKFWDNQNQLLFVTVAALSAADFVVTRANLQNGGKELNPVTRLFSGSTPGLALNFAGETAGIIGLSYYFHKTGHHRLERITPLLNIGASSFAVLYDLNHR*
Ga0136449_1000119407	F033888	N/A	MLGGLKMTEFLRKTGSNGRLADIAEYVVMLFVTLMTGVSTLRLLGILP*