Scaffold Ga0126381_100064000

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100064000
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4557
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001907	Metagenome / Metatranscriptome	619	Y
F069281	Metagenome / Metatranscriptome	124	Y
F072961	Metagenome	120	Y
F098427	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_10006400010	F072961	AGGGGG	MPTFHRRPQFHTTSIYKPPSAHAAEREDNQMPTENLSELLGRVSENSTTKIDDLVGDFGQLREKLRVDGERIQRDVEDYRALSEQVMQLTKTISESVEKVRTSVVRPTTERD*
Ga0126381_1000640007	F098427	GGAG	MAKFVPLTLMSKTQKVTLYLNMDQVRYLRPQTGGGTTIYFGDEQSVMVEEDAATVANMVRGK*
Ga0126381_1000640008	F069281	N/A	MLAQLQGWLVMPTDLRVASERKREAAQAQAQTELTILLVFVIISLATLVMLVGDQSFSKASIEMIGRIAP*
Ga0126381_1000640009	F001907	N/A	MNIERFAGHHEARQALVISVAGVTAIMLIANLILIILY*