Metagenome / Metatranscriptome Family F069281

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069281
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	58 residues
Representative Sequence	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Number of Associated Samples	75
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.87 %
% of genes near scaffold ends (potentially truncated)	26.61 %
% of genes from short scaffolds (< 2000 bps)	83.06 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.968 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.581 % of family members)
Environment Ontology (ENVO)	Unclassified (48.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.129 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.95% β-sheet: 0.00% Coil/Unstructured: 36.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13378	MR_MLE_C	4.03
PF04392	ABC_sub_bind	4.03
PF02077	SURF4	3.23
PF09361	Phasin_2	3.23
PF00239	Resolvase	2.42
PF07681	DoxX	1.61
PF08042	PqqA	0.81
PF02746	MR_MLE_N	0.81
PF13417	GST_N_3	0.81
PF00753	Lactamase_B	0.81
PF13683	rve_3	0.81
PF13424	TPR_12	0.81
PF00528	BPD_transp_1	0.81
PF04972	BON	0.81
PF04226	Transgly_assoc	0.81
PF03457	HA	0.81
PF13387	DUF4105	0.81
PF06411	HdeA	0.81
PF09992	NAGPA	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	4.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.03
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.42
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	2.42
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.61
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.61
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
All Organisms	root	All Organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
cellular organisms	root	All Organisms → cellular organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.03 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.42 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.61 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.42 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	1.61 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.42 %
Hyphomicrobium sp. GJ21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1.61 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.81 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10075239	Not Available	726	Open in IMG/M
3300004152\|Ga0062386_100605134	Not Available	895	Open in IMG/M
3300004633\|Ga0066395_10055847	Not Available	1767	Open in IMG/M
3300005332\|Ga0066388_100098976	All Organisms → cellular organisms → Bacteria	3373	Open in IMG/M
3300005332\|Ga0066388_100137176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3003	Open in IMG/M
3300005332\|Ga0066388_100252949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	2401	Open in IMG/M
3300005332\|Ga0066388_100327347	All Organisms → cellular organisms → Bacteria → Proteobacteria	2178	Open in IMG/M
3300005332\|Ga0066388_100390217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2038	Open in IMG/M
3300005332\|Ga0066388_100540482	Not Available	1796	Open in IMG/M
3300005332\|Ga0066388_101633141	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300005332\|Ga0066388_101959101	Not Available	1048	Open in IMG/M
3300005332\|Ga0066388_101997401	Not Available	1039	Open in IMG/M
3300005332\|Ga0066388_102816310	Not Available	888	Open in IMG/M
3300005332\|Ga0066388_102816993	Not Available	888	Open in IMG/M
3300005332\|Ga0066388_103305142	Not Available	824	Open in IMG/M
3300005332\|Ga0066388_105618387	Not Available	635	Open in IMG/M
3300005363\|Ga0008090_14342542	Not Available	508	Open in IMG/M
3300005467\|Ga0070706_101855229	Not Available	547	Open in IMG/M
3300005764\|Ga0066903_100276911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2625	Open in IMG/M
3300005764\|Ga0066903_101823959	Not Available	1163	Open in IMG/M
3300005764\|Ga0066903_102060017	Not Available	1097	Open in IMG/M
3300005764\|Ga0066903_103273935	Not Available	875	Open in IMG/M
3300005764\|Ga0066903_103443314	Not Available	853	Open in IMG/M
3300005764\|Ga0066903_106119414	Not Available	630	Open in IMG/M
3300006052\|Ga0075029_101156312	Not Available	539	Open in IMG/M
3300006052\|Ga0075029_101185633	Not Available	533	Open in IMG/M
3300006086\|Ga0075019_11073448	Not Available	522	Open in IMG/M
3300006172\|Ga0075018_10812617	Not Available	513	Open in IMG/M
3300009038\|Ga0099829_11567461	Not Available	544	Open in IMG/M
3300009792\|Ga0126374_10051731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2089	Open in IMG/M
3300010046\|Ga0126384_10929094	Not Available	788	Open in IMG/M
3300010048\|Ga0126373_10184932	Not Available	2008	Open in IMG/M
3300010048\|Ga0126373_10718483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300010359\|Ga0126376_10756799	Not Available	943	Open in IMG/M
3300010359\|Ga0126376_11969782	Not Available	625	Open in IMG/M
3300010360\|Ga0126372_10336108	Not Available	1347	Open in IMG/M
3300010361\|Ga0126378_10067600	All Organisms → cellular organisms → Bacteria	3407	Open in IMG/M
3300010361\|Ga0126378_11979747	Not Available	664	Open in IMG/M
3300010361\|Ga0126378_12042000	Not Available	653	Open in IMG/M
3300010361\|Ga0126378_12921993	Not Available	545	Open in IMG/M
3300010366\|Ga0126379_11111877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300010376\|Ga0126381_100064000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	4557	Open in IMG/M
3300010376\|Ga0126381_101544439	Not Available	959	Open in IMG/M
3300010376\|Ga0126381_101827909	Not Available	877	Open in IMG/M
3300010376\|Ga0126381_102950842	Not Available	676	Open in IMG/M
3300010376\|Ga0126381_104972411	Not Available	510	Open in IMG/M
3300010398\|Ga0126383_12623965	Not Available	587	Open in IMG/M
3300010863\|Ga0124850_1038288	Not Available	1528	Open in IMG/M
3300012948\|Ga0126375_10162510	Not Available	1423	Open in IMG/M
3300012971\|Ga0126369_11047752	Not Available	904	Open in IMG/M
3300012971\|Ga0126369_11753779	Not Available	710	Open in IMG/M
3300016294\|Ga0182041_10059655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2627	Open in IMG/M
3300016294\|Ga0182041_11883804	Not Available	555	Open in IMG/M
3300016319\|Ga0182033_11559022	Not Available	597	Open in IMG/M
3300016357\|Ga0182032_10134072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1808	Open in IMG/M
3300016371\|Ga0182034_10095460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2115	Open in IMG/M
3300016371\|Ga0182034_11624286	Not Available	568	Open in IMG/M
3300016387\|Ga0182040_10151059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1655	Open in IMG/M
3300016404\|Ga0182037_12152775	Not Available	502	Open in IMG/M
3300016422\|Ga0182039_11620515	Not Available	591	Open in IMG/M
3300016422\|Ga0182039_11825471	Not Available	557	Open in IMG/M
3300016445\|Ga0182038_10627462	Not Available	930	Open in IMG/M
3300017822\|Ga0187802_10002332	All Organisms → cellular organisms → Bacteria → Proteobacteria	5346	Open in IMG/M
3300017822\|Ga0187802_10005007	All Organisms → cellular organisms → Bacteria	3968	Open in IMG/M
3300017822\|Ga0187802_10116246	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017924\|Ga0187820_1005990	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300017937\|Ga0187809_10035658	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300017995\|Ga0187816_10502048	Not Available	546	Open in IMG/M
3300018007\|Ga0187805_10272454	Not Available	777	Open in IMG/M
3300018060\|Ga0187765_10757989	Not Available	643	Open in IMG/M
3300020580\|Ga0210403_10964027	Not Available	669	Open in IMG/M
3300020581\|Ga0210399_10630605	Not Available	885	Open in IMG/M
3300021560\|Ga0126371_10095142	Not Available	2954	Open in IMG/M
3300021560\|Ga0126371_11219235	Not Available	888	Open in IMG/M
3300021560\|Ga0126371_11474292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300021560\|Ga0126371_11504471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	801	Open in IMG/M
3300021560\|Ga0126371_12878887	Not Available	583	Open in IMG/M
3300021560\|Ga0126371_12904755	Not Available	581	Open in IMG/M
3300025915\|Ga0207693_10433342	Not Available	1028	Open in IMG/M
3300027371\|Ga0209418_1011878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1378	Open in IMG/M
3300027874\|Ga0209465_10630806	Not Available	529	Open in IMG/M
3300031543\|Ga0318516_10187081	Not Available	1194	Open in IMG/M
3300031573\|Ga0310915_10085632	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300031668\|Ga0318542_10634211	Not Available	558	Open in IMG/M
3300031680\|Ga0318574_10138159	Not Available	1377	Open in IMG/M
3300031719\|Ga0306917_10575662	Not Available	885	Open in IMG/M
3300031753\|Ga0307477_10327752	Not Available	1055	Open in IMG/M
3300031753\|Ga0307477_10934622	Not Available	571	Open in IMG/M
3300031768\|Ga0318509_10129552	Not Available	1381	Open in IMG/M
3300031771\|Ga0318546_10561146	Not Available	802	Open in IMG/M
3300031777\|Ga0318543_10425830	Not Available	595	Open in IMG/M
3300031781\|Ga0318547_10552186	Not Available	713	Open in IMG/M
3300031781\|Ga0318547_10992408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	525	Open in IMG/M
3300031797\|Ga0318550_10320779	Not Available	751	Open in IMG/M
3300031821\|Ga0318567_10632101	Not Available	608	Open in IMG/M
3300031879\|Ga0306919_10343652	Not Available	1139	Open in IMG/M
3300031890\|Ga0306925_10135257	All Organisms → cellular organisms → Bacteria → Proteobacteria	2647	Open in IMG/M
3300031890\|Ga0306925_10319999	Not Available	1667	Open in IMG/M
3300031890\|Ga0306925_10333163	Not Available	1631	Open in IMG/M
3300031890\|Ga0306925_12011904	Not Available	545	Open in IMG/M
3300031910\|Ga0306923_10378261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1613	Open in IMG/M
3300031910\|Ga0306923_10451244	Not Available	1459	Open in IMG/M
3300031912\|Ga0306921_10291029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300031912\|Ga0306921_11085491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	898	Open in IMG/M
3300031942\|Ga0310916_10809739	Not Available	788	Open in IMG/M
3300031947\|Ga0310909_10281550	Not Available	1392	Open in IMG/M
3300031947\|Ga0310909_11252888	Not Available	598	Open in IMG/M
3300031954\|Ga0306926_10687517	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300031954\|Ga0306926_12618371	Not Available	550	Open in IMG/M
3300031962\|Ga0307479_11718406	Not Available	581	Open in IMG/M
3300032044\|Ga0318558_10539528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	583	Open in IMG/M
3300032051\|Ga0318532_10100586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300032052\|Ga0318506_10255789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300032064\|Ga0318510_10124165	Not Available	1002	Open in IMG/M
3300032066\|Ga0318514_10546072	Not Available	617	Open in IMG/M
3300032076\|Ga0306924_10579008	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300032090\|Ga0318518_10728975	Not Available	504	Open in IMG/M
3300032094\|Ga0318540_10129267	Not Available	1202	Open in IMG/M
3300032180\|Ga0307471_100923673	Not Available	1040	Open in IMG/M
3300032180\|Ga0307471_103586177	Not Available	549	Open in IMG/M
3300032261\|Ga0306920_100161875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3336	Open in IMG/M
3300033290\|Ga0318519_10481634	Not Available	746	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.32%
Aquatic	Environmental → Aquatic	9.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.32%
Freshwater	Environmental → Aquatic → Freshwater	6.45%
Sediment	Environmental → Aquatic → Sediment	3.23%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.35%
Loam	Environmental → Terrestrial → Soil → Loam	20.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.03%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100752391	3300000793	Forest Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVFVIIALAMLVLLFADQTFSKAAIEFMCLI*
Ga0062386_1006051343	3300004152	Bog Forest Soil	MPIDVGLVLERKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF*
Ga0066395_100558473	3300004633	Tropical Forest Soil	MYTDVRRRKAQAQTEETILLVFVIITLAMLVLLVADQSFSKATIEVMGRLA*
Ga0066388_1000989762	3300005332	Tropical Forest Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTIGWECLLAP
Ga0066388_1001371762	3300005332	Tropical Forest Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0066388_1002529492	3300005332	Tropical Forest Soil	MPTDLSLVSDRKRKAAAQAQGQIEVTILLVFVIITLAMLVMLFADQSFSKATIELMCFF*
Ga0066388_1003273474	3300005332	Tropical Forest Soil	MGLIMPTDLGVASGRERKATQAQTQTAITILLVFVIISLAMLVLLFADQSFSKATIEMLGRLGP*
Ga0066388_1003902175	3300005332	Tropical Forest Soil	MPTNLRVITERERKATQPETQTAITILLVFVIFSLVMLVLLFLDQSFSKASIELMGRLAP
Ga0066388_1005404823	3300005332	Tropical Forest Soil	MPTDLGVALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0066388_1016331412	3300005332	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLLADQSFSKATIELMCLF*
Ga0066388_1019591011	3300005332	Tropical Forest Soil	MPTHLGLALECKRKATQAQTQTAITILLVWVIIALVMLGLLFADQSFSKATIEMMGRLPP
Ga0066388_1019974013	3300005332	Tropical Forest Soil	MSTDLGLVSERKRKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF*
Ga0066388_1028163101	3300005332	Tropical Forest Soil	MSINLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0066388_1028169933	3300005332	Tropical Forest Soil	MPTNLGVALERKRKAVQPQAQTGVTVLLVFVIISLAMLVLLVADQSFSKAAIELMGRLAP
Ga0066388_1033051422	3300005332	Tropical Forest Soil	MSTDFGLVSERKRKAAGSQARTEVTILLVCVIITLAMLVLLFADQSFSKAAIE
Ga0066388_1056183871	3300005332	Tropical Forest Soil	MPTDLNVVLEHKRTATRAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTPTIGWECLLAP
Ga0008090_143425421	3300005363	Tropical Rainforest Soil	MPTDLGVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATI
Ga0070706_1018552292	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLGVASERKRKATQAETQTAIMILLVCVIITLAMLLLLFSDQSFSKATIELMGRLGP
Ga0066903_1002769112	3300005764	Tropical Forest Soil	VPTDLSVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATIELMGRLAP
Ga0066903_1018239591	3300005764	Tropical Forest Soil	MPTDLRAASERKREAAQVQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGR
Ga0066903_1020600173	3300005764	Tropical Forest Soil	VPTDLGIASERKRKATQTQTQTVITILLVWFIITLATLVLLFSDQSFSKATIELMGRLAP
Ga0066903_1032739353	3300005764	Tropical Forest Soil	MPTDLGALLQRKRKATQAETQTEVTILLVFVIITLAMLVLLVADQSFSKATIEVMGRLAP
Ga0066903_1034433141	3300005764	Tropical Forest Soil	GPDLRGSWIMSTDLGLVSERERKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF*
Ga0066903_1061194141	3300005764	Tropical Forest Soil	MPTDLGAASERKRKATHAETQTEVTILLVFVIISLAMLVLLLATKAFQKHQSK*
Ga0075029_1011563121	3300006052	Watersheds	MPIDVGLVSGRKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSEATIELMCLF*
Ga0075029_1011856331	3300006052	Watersheds	GWLIMPTDLGAASERKRKAAQAQAQTETTILLVFVIISLVALVVLVADQSFAKATIEMIGHLAP*
Ga0075019_110734481	3300006086	Watersheds	MPTDLGVVSEGKGKAQAQTKAEITILLVCVIITLVMLVLLFADQSFSKATIELMCLF*
Ga0075018_108126171	3300006172	Watersheds	MASEYAGVGWLIMPTDLGAASERKRKAAQAQAQTETTILLVFVIISLVALVVLVADQSFAKATIEMIGHLAP*
Ga0099829_115674611	3300009038	Vadose Zone Soil	VGQPEGWLIMSTDLGVVSEGKDKAQAPTQEVTIVLVWFIICLVMFVLLFADQSFSKATIELMCLF*
Ga0126374_100517311	3300009792	Tropical Forest Soil	MPTNLGVALERKRKAVQPQAQTGVTVLLVFVIISLAMLVLLVADQSFSKATIEVMGRLA*
Ga0126384_109290941	3300010046	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIITLVMLGLLFADQSFSKATIEMMGRLPP
Ga0126373_101849322	3300010048	Tropical Forest Soil	VPTDLSVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATIEMLGRLGP
Ga0126373_107184831	3300010048	Tropical Forest Soil	MSINLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLALLCADQSFSKAAIEFMCLF*
Ga0126376_107567991	3300010359	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIITLVMLGLLFADQSFSKATIEMMGRLLP
Ga0126376_119697821	3300010359	Tropical Forest Soil	MPTDLGVVSERKRKTTQAQTQTEITILLVWVIITLVMLTLLFLDQSFSKATIELMGHLPP
Ga0126372_103361083	3300010360	Tropical Forest Soil	MPTDLGVALERKRKVTQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0126378_100676001	3300010361	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIFTLVMLGLLIADQSFSKATIEMMGRLPP
Ga0126378_119797471	3300010361	Tropical Forest Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSRATIELMCLF*
Ga0126378_120420002	3300010361	Tropical Forest Soil	MSTDLGLVSQREGWAAQSQAQTAITLMLVFVIVSLAMLVLLFADQSFSKATIELMCLF*
Ga0126378_129219931	3300010361	Tropical Forest Soil	WCGSASMPTDLGAASERKRKATHAETQTEVTILLVFVIISLAMLVLLLATKAFQKHQSK*
Ga0126379_111118772	3300010366	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF*
Ga0126381_1000640008	3300010376	Tropical Forest Soil	MLAQLQGWLVMPTDLRVASERKREAAQAQAQTELTILLVFVIISLATLVMLVGDQSFSKASIEMIGRIAP*
Ga0126381_1015444392	3300010376	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIIALVMLGLLFADQSFSKATIEMMGRLLP
Ga0126381_1018279094	3300010376	Tropical Forest Soil	VLIMPTDLGVASERKRKAVQPQAQTELTILLVFVIISLAMLVLLVADQSFSKASIEMIGRLAP*
Ga0126381_1029508421	3300010376	Tropical Forest Soil	MSIDLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0126381_1049724112	3300010376	Tropical Forest Soil	MLALMPTDLDGASERKRKAAQTQARNENTIQLVIVIISLAMLMLLAADHSVSRASIELIGHLPP*
Ga0126383_126239652	3300010398	Tropical Forest Soil	MPTDLGVVSERKRKTTQAQTQTEITILSVCVIITLVTLTLLFLDQSFSKATIELMGHLPP
Ga0124850_10382882	3300010863	Tropical Forest Soil	MPTDLGVVSERKREAVQAQAQTEVTILLVFVITSLAALVLLVADQSFSKASIEMIGRLAP
Ga0126375_101625101	3300012948	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIFTLVMLGLLFADQSFSKATIEMMGRLPP
Ga0126369_110477521	3300012971	Tropical Forest Soil	MPTDLRAASERKREAAQVQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGRLAP
Ga0126369_117537791	3300012971	Tropical Forest Soil	MSLNLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0182041_100596555	3300016294	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTQQ
Ga0182041_118838041	3300016294	Soil	MVGQPRGLIMPTDLGVASGRERKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0182033_115590223	3300016319	Soil	LGLALERKRKATRAQTQPEITILLVCVIITLVMLKLLFLDQSFSKATIELLGHLPP
Ga0182032_101340722	3300016357	Soil	MPTDLNVVLERKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0182034_100954603	3300016371	Soil	MPMDLNVVLEHKRTATRAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0182034_116242862	3300016371	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFSKA
Ga0182040_101510591	3300016387	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIIFLGMLVLLFADVSFSTPTIGWECLLAP
Ga0182037_121527751	3300016404	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSR
Ga0182039_116205151	3300016422	Soil	MMSTDLGLVSERQRKAAQGQAQTEVTILLLFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0182039_118254712	3300016422	Soil	MPTDLGALLQRKRKATQAVTQTEVTILLVFVIITLAMLVLLVADQSFSKASIELIGRLAP
Ga0182038_106274622	3300016445	Soil	MPTDLGVISERKRKAAQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0187802_100023328	3300017822	Freshwater Sediment	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187802_100050075	3300017822	Freshwater Sediment	MPTDLPALSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKATIEWECLF
Ga0187802_101162461	3300017822	Freshwater Sediment	MPIDVGLVSGRKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187820_10059903	3300017924	Freshwater Sediment	MPTDLPTLSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKATIEWECLF
Ga0187809_100356583	3300017937	Freshwater Sediment	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSK
Ga0187816_105020482	3300017995	Freshwater Sediment	MPIDVGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187805_102724541	3300018007	Freshwater Sediment	MPTDLPTLSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKA
Ga0187765_107579892	3300018060	Tropical Peatland	MPTDLRVASERKRKAAQAQAQTEVTILSVFVIIGLVMLLLLAVDQSFSKSAIELSGQF
Ga0210403_109640271	3300020580	Soil	ASGRERKATQAQTQTAITILLVFVIISLAMLVLLFADQSFSKATIEMLGRLGP
Ga0210399_106306051	3300020581	Soil	MPINLGLVSERKGEVAQAQAQTEVTILLVFVIITLAMLVLLFADQAFQKQQSN
Ga0126371_100951425	3300021560	Tropical Forest Soil	VPTDLGIASERKRKATQTQKQTVITILLVWFIITLATLVLLFSDQSFSKATIELMGRLAP
Ga0126371_101372363	3300021560	Tropical Forest Soil	MYTDVRRRKAQAQTEETILLVFVIITLAMLVLLVADQSFSKATIEVMGRLA
Ga0126371_112192351	3300021560	Tropical Forest Soil	MLAQLQGWLVMPTDLRVASERKREAAQAQAQTELTILLVFVIISLATLVMLVGDQSFSKASIEMIGRIAP
Ga0126371_114742923	3300021560	Tropical Forest Soil	MSTDLGLVSERKRKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF
Ga0126371_115044711	3300021560	Tropical Forest Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELIGRLGP
Ga0126371_128788871	3300021560	Tropical Forest Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVFVIIALAMLVLLFADQTFSKAAIEFMCLI
Ga0126371_129047551	3300021560	Tropical Forest Soil	MSTDLGLVSQREGRPAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSRATIELMCLF
Ga0207693_104333421	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGLIMPTELGVVSEVKAQAQTQTLITIVLVCGIITLVMLVLLFADQSFSKATIELMCLF
Ga0209418_10118783	3300027371	Forest Soil	MPTDLGLASERKRKATQAQTQIEITILLVCVIITLAMLVLLFADQSFSKASI
Ga0209465_106308061	3300027874	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLLADQSFSKATIELMCLF
Ga0318516_101870812	3300031543	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0310915_100856324	3300031573	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0318542_106342112	3300031668	Soil	LGSQPKPVTRNYPGPSLQGWLIMPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIETIGRIAP
Ga0318574_101381591	3300031680	Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTIG
Ga0306917_105756621	3300031719	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0307477_103277521	3300031753	Hardwood Forest Soil	MPTDVSVASECKRKAAQAQTQIEITVVLIWIMIGLVMLVLLLADQSFSKATIELM
Ga0307477_109346221	3300031753	Hardwood Forest Soil	MPTDLGVAPERKGKAAQAETQAEVTILLVCVIITLSMLVLLFADQSFSKATIELMCLF
Ga0318509_101295521	3300031768	Soil	MPTDLGVALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWEC
Ga0318546_105611463	3300031771	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFS
Ga0318543_104258301	3300031777	Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIEWECLF
Ga0318547_105521862	3300031781	Soil	MPTDLNVVLEHKRTATRAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTPTIGWECL
Ga0318547_109924081	3300031781	Soil	MVWISLGWLIMPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0318550_103207791	3300031797	Soil	MPTDLGVVSARKCKATQAQTQTVATIVLVWLIISLIMLVLLFADQSFSKATIEW
Ga0318567_106321011	3300031821	Soil	SQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0306919_103436522	3300031879	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIETIGRIAP
Ga0306925_101352573	3300031890	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTPTIGWECLLAP
Ga0306925_103199991	3300031890	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0306925_103331632	3300031890	Soil	MPTDLGVISERKRKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0306925_120119042	3300031890	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLCADQSFSKAAIEFMCLF
Ga0306923_103782612	3300031910	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLTMLVLLFADQSFSKATIELMCLF
Ga0306923_104512441	3300031910	Soil	NRFRLGITTRGRVAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0306921_102910291	3300031912	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTPTIGWECLLAP
Ga0306921_110854912	3300031912	Soil	MSTDLGLVSERQRKAAQGQAQTEVTILLLFVIITLAMLVLLFVDQSFSKATIELMCLF
Ga0310916_108097391	3300031942	Soil	MSTDLGLVSQREGRAAQGQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0310909_102815501	3300031947	Soil	MPTDLGVISERKRKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELM
Ga0310909_112528882	3300031947	Soil	MSTDLGLVSERERKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF
Ga0306926_106875173	3300031954	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGRLAP
Ga0306926_126183712	3300031954	Soil	MPTDLGALSERKRKATQAETQTEVTILLVFVIITLAMLVLLVADQSFSKATIEVMGRLAP
Ga0307479_117184062	3300031962	Hardwood Forest Soil	AGVGWLIMPTDLGAASERKRKAAQAQAQTETTILLVVVIISLVTLVLLVADQSFASVTIEMTGLLAP
Ga0310911_106327892	3300032035	Soil	QRKAAQGQAQTEVTILLLFVIITLAMLVLLFVDQSFSKATIELMCLF
Ga0318558_105395281	3300032044	Soil	MPTDLGVVSERKHKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0318532_101005861	3300032051	Soil	LGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0318506_102557891	3300032052	Soil	PRIWIIMPTDLGVASERKRKATQAQRQTEITVLLVYLIVSLVMIMLLVADQSFSKAAIELVSRLSP
Ga0318510_101241653	3300032064	Soil	MPTDLGVVSARKCKATQAQTQTVATIVLVWLIISLIMLVLLFADQSFSKATIEWE
Ga0318514_105460722	3300032066	Soil	MPTDLGMALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0306924_105790081	3300032076	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSVSKESIEMIGRLAP
Ga0318518_107289751	3300032090	Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF
Ga0318540_101292671	3300032094	Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTI
Ga0307471_1009236731	3300032180	Hardwood Forest Soil	MPTDLGLASERKRKATQAQTQIEITILLVCVIITLAMLVLLFADQSFSKASIELMGRLGP
Ga0307471_1035861771	3300032180	Hardwood Forest Soil	YAGVGWLIMRTDLGAAALAQAQTETTILLVFVIISLVALVLLVADQSFSKASIELLGRLA
Ga0306920_1001618755	3300032261	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLCADQSFSKATIELMCLF
Ga0318519_104816341	3300033290	Soil	QREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069281

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences