Scaffold Ga0126381_100035639

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100035639
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5983
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015458	Metagenome / Metatranscriptome	254	Y
F071525	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_1000356392	F071525	AGAAGG	MRRTVFTFTVAALICAAAYETSRATPIEPLAGIQAGSGNIALAYSQHARQSHRYIVIPLRRDYGWWPQGQYRWFPFGPARWGYWCEPVDYHHLSCGVGD*
Ga0126381_1000356395	F015458	AGGA	MIWKTNSSIVGRAWRSSMTRSALIVAAVALLLVGTSLASAKSRSTSAHSKPSSPTAMSAPGPRNIVADPYYRLSDAYYGDSDPYRGLFDFYAVPPYSPGNSYGYVRPVGR*