NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_10395442

Scaffold Ga0126379_10395442


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_10395442 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1428
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008656Metagenome / Metatranscriptome330Y
F025586Metagenome / Metatranscriptome201N
F094325Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0126379_103954422F008656GAGGMDPPIGPAGDDASRNLGAAGADMSTDLTPRIALIALAAFLASPAHAQPAPGQAPPNAVSIEQSVVFDVTPVTGALKETAQKGQQLVWRARRSPNDRRFALTDMSVAFLRSEAPTEVKITFAGHVSAFGWRPESDPKLEVIVRTRGGASIYFWNFAVSVRCADSNRPLPPFSQVVPNDITANLFNSVGTVEISEYREPNAPILTARQCPS*
Ga0126379_103954423F025586N/ALAEEATTRTITVVLLAPLGTALTAVSANAGAWCANYLRGVSNCGYSSANQCWATVRGLGDGFCAPNPYPGTAYGSGGSWNTSKSRKRYQRSY*
Ga0126379_103954424F094325N/ASVCGYNQSQRMANRLGWEMEMSERRITQLFGLGLGAIITCTMVLNAFAF*
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