Scaffold Ga0126379_10145230

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10145230
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2201
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000428	Metagenome / Metatranscriptome	1150	Y
F042506	Metagenome / Metatranscriptome	158	Y
F068584	Metagenome / Metatranscriptome	124	Y
F089331	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_101452302	F000428	GGAGG	MRLEGHFESSSTLQRNERVKLAASFWNNVGAGMVIGGMAGAFFLDKPPGAWTKIGIAMAGLALGWLCYSIASAMLTYKHTAPEERR*
Ga0126379_101452303	F042506	GGAG	MTPVQGCSICGGAIVGFGNYAWPVNDDRCCDQCNSERVIPALRLREREAKREEGSNGRALQMIDLNDIKDDSFLAINVIDLRWLCDLWAQLANESRPLNRQAIAKRLAAVLENAEFF*
Ga0126379_101452304	F089331	AGG	MTELRMLSLAAAIVALVSYYSVQFYRVAVEPTRAHTTERAR*
Ga0126379_101452305	F068584	GAG	MSNILKPIDLVDRAIRRAVFAVLDGTEHRANRKGSEQLLRMQERDKHQVHVFIEGRP*