Scaffold Ga0126379_10103294

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10103294
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2542
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F059390	Metagenome / Metatranscriptome	134	Y
F071508	Metagenome	122	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_101032942	F059390	GGAG	MQITTVGSLSVTVGWLIAIVILILAILGLVGVLANTSLIVFGLIGGLAISRLL*
Ga0126379_101032943	F071508	N/A	VSWDPTWFMPAQAYSWTCSVCSTTWVLQATDTAYQDTDIYDARYAVGEEMGYPACVNETYGLMSQQCIVDELARHGLVARQAWCSFDEAYAIARTNTGTINPTGQYHVMALRGVTGADIAVANSAEGYYGVYSTLSREQFNALGPVSIVYVEGRS*
Ga0126379_101032944	F092511	N/A	MTDAYSDDQAAQITLLQSQQGLFTQALKAALEGHWTGAGSVEAFLYALDPNMQGALAPDPPVTESEYDAENPKA*
Ga0126379_101032946	F031594	AGGAG	MSVRPITFNPDGSIEVIYDELGHSGTIPAAEVRWTTGIDGAENHNYIVLNCPDGCGASSTHPVGGGADAPNVQQMFVHKTELEGCACGNVAAATNAVPEAHVHLNVARMDGEERWAIA*