Scaffold Ga0126377_10006286

Overview

Basic Information

• Taxon OID: 3300010362
• Scaffold ID: Ga0126377_10006286
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8906
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006812	Metagenome / Metatranscriptome	364	Y
F011852	Metagenome / Metatranscriptome	286	Y
F070071	Metagenome / Metatranscriptome	123	N
F082926	Metagenome / Metatranscriptome	113	N
F087420	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_100062861	F082926	GGAGG	MPDISATGQPEQSHVVTWKVISIGTAVVLVVFLVLWL*
Ga0126377_1000628616	F006812	GAG	MYVLLIFLLVALPFGTAIACGALMQWAGNMISGWSSIGGLALGIYFFHKCMEVLAA*
Ga0126377_100062862	F011852	AGCAG	MPLFSYFAVVGVALTLALLFISSRIQPLGSPVPTSQIVGIAKPFKPEPERSPYTITGTNFAAAYKPASARATEEPKPVRRAESHRQQRPATADAADRGVPRWKYMAQNPFAALMGIH*
Ga0126377_100062867	F070071	GAGG	MIIIGATLVAGTSAGFWYLLPRNGKEHPLVENPGVGSMVTIVILTLFIVGVAVMCDGLLG
Ga0126377_100062869	F087420	GGAG	MQPKLGAYTTRSAAGVAIGLVLSAFPGASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*