Scaffold Ga0126378_10000107

Overview

Basic Information

• Taxon OID: 3300010361
• Scaffold ID: Ga0126378_10000107
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62100
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004851	Metagenome / Metatranscriptome	421	Y
F018095	Metagenome / Metatranscriptome	237	Y
F031619	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126378_1000010713	F004851	GGAGG	MPNGTLDLMKLDGHPQTYQIMFEQNAGGTFVARVESDELVPFLHEEMRVELPTAESAAQRLQKENRIRLQNVFLEENNLHAVMDYMEEDIE*
Ga0126378_1000010727	F031619	GAG	MRISKRHLFRLGLPVAALLLCMPQQALAKDDFGQIVKHIEVTYHVHRQHRFVMGMAGFVVKFWHFAGVKNFKGAIFENQPFVNAASDTRFDEVVRAAMNSGWQPMVQEWDRHTGERTYIYAQDLGKDLKMLVVSLESNEAVVIQVKVNPDKLQEFVREAGVGRHHDRALPHEETNPREETLEVAAAPASSWDGVCLLDEQEAALTEP*
Ga0126378_1000010733	F018095	AGGAG	MDAKWNNIVDNAAVRIAMVVVVFGAWFAIGYRLLAG*