Scaffold Ga0126376_10002931

Overview

Basic Information

• Taxon OID: 3300010359
• Scaffold ID: Ga0126376_10002931
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9776
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F071554	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126376_100029312	F037883	AGGAG	MNENNRVLLRIGARELTRDELDQVSAGGGPPCRMTFTHLPKGGSDEDVQCP*
Ga0126376_100029313	F011259	AGG	MYQNKKGEKRMSKQQDNRVLVRLGARELTIEEIDSVSAAAIQFRTLVCTAVMKTATVTGPGDGDGCSDTDSDASFI*
Ga0126376_100029314	F011259	AGGAG	MNEQDRVLVRLGARELTIEEIDQVNAAQFHTNVCTAIMATATATGPGDGDGCSDTDKDTHFI*
Ga0126376_100029318	F071554	AGGAG	VNDSNRVLTRAGARELSEEEVELINGGVHTNVITWNPFTGARDGDGCVMES*