Metagenome / Metatranscriptome Family F071554

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071554
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	50 residues
Representative Sequence	NHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Number of Associated Samples	92
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.97 %
% of genes near scaffold ends (potentially truncated)	15.57 %
% of genes from short scaffolds (< 2000 bps)	69.67 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.295 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.131 % of family members)
Environment Ontology (ENVO)	Unclassified (27.869 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.754 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.21% β-sheet: 5.26% Coil/Unstructured: 85.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00005	ABC_tran	8.33
PF04368	DUF507	5.83
PF03412	Peptidase_C39	4.17
PF00664	ABC_membrane	3.33
PF01925	TauE	1.67
PF08331	QueG_DUF1730	0.83
PF13185	GAF_2	0.83
PF01380	SIS	0.83
PF12867	DinB_2	0.83
PF00723	Glyco_hydro_15	0.83
PF02838	Glyco_hydro_20b	0.83
PF12704	MacB_PCD	0.83
PF13181	TPR_8	0.83
PF13484	Fer4_16	0.83
PF05974	DUF892	0.83
PF05227	CHASE3	0.83
PF13620	CarboxypepD_reg	0.83
PF00908	dTDP_sugar_isom	0.83
PF12833	HTH_18	0.83
PF03050	DDE_Tnp_IS66	0.83
PF04542	Sigma70_r2	0.83
PF13432	TPR_16	0.83
PF05368	NmrA	0.83
PF13561	adh_short_C2	0.83
PF05193	Peptidase_M16_C	0.83
PF16912	Glu_dehyd_C	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.67
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1600	Epoxyqueuosine reductase QueG (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.83
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.83
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3525	N-acetyl-beta-hexosaminidase	Carbohydrate transport and metabolism [G]	0.83
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.26 %
Unclassified	root	N/A	37.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	37.70 %
Unclassified	root	N/A	37.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	30.33 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	30.33 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.56 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	30.33 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.82 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	30.33 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	1.64 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	0.82 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	30.33 %
Mycolicibacterium conceptionense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium conceptionense	0.82 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	0.82 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001087\|JGI12677J13195_1000140	All Organisms → cellular organisms → Bacteria → Acidobacteria	12999	Open in IMG/M
3300001471\|JGI12712J15308_10074226	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	860	Open in IMG/M
3300001593\|JGI12635J15846_10276858	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1062	Open in IMG/M
3300002677\|Ga0005475J37263_103215	Not Available	567	Open in IMG/M
3300004082\|Ga0062384_100008938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	3744	Open in IMG/M
3300004103\|Ga0058903_1410716	Not Available	511	Open in IMG/M
3300004631\|Ga0058899_10131783	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	697	Open in IMG/M
3300004631\|Ga0058899_12152893	Not Available	525	Open in IMG/M
3300005524\|Ga0070737_10011889	All Organisms → cellular organisms → Bacteria → Proteobacteria	6867	Open in IMG/M
3300005534\|Ga0070735_10009086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7749	Open in IMG/M
3300005541\|Ga0070733_10035482	All Organisms → cellular organisms → Bacteria	3110	Open in IMG/M
3300005542\|Ga0070732_10008818	All Organisms → cellular organisms → Bacteria	5506	Open in IMG/M
3300005921\|Ga0070766_10294699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1040	Open in IMG/M
3300005921\|Ga0070766_10372145	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300005950\|Ga0066787_10035745	Not Available	914	Open in IMG/M
3300006173\|Ga0070716_101095236	Not Available	635	Open in IMG/M
3300006176\|Ga0070765_100270409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium conceptionense	1564	Open in IMG/M
3300009624\|Ga0116105_1000098	All Organisms → cellular organisms → Bacteria → Acidobacteria	29070	Open in IMG/M
3300009635\|Ga0116117_1003091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	4471	Open in IMG/M
3300009665\|Ga0116135_1015360	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2668	Open in IMG/M
3300009759\|Ga0116101_1043382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	953	Open in IMG/M
3300010046\|Ga0126384_10320624	Not Available	1281	Open in IMG/M
3300010359\|Ga0126376_10002931	All Organisms → cellular organisms → Bacteria	9776	Open in IMG/M
3300010360\|Ga0126372_10099475	Not Available	2182	Open in IMG/M
3300011120\|Ga0150983_10268182	All Organisms → cellular organisms → Bacteria → Acidobacteria	1197	Open in IMG/M
3300011120\|Ga0150983_10270371	Not Available	528	Open in IMG/M
3300011120\|Ga0150983_15618257	Not Available	586	Open in IMG/M
3300011120\|Ga0150983_16235745	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	881	Open in IMG/M
3300011411\|Ga0153933_1082227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	683	Open in IMG/M
3300012359\|Ga0137385_10625997	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	903	Open in IMG/M
3300012924\|Ga0137413_10230330	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1262	Open in IMG/M
3300014169\|Ga0181531_10000056	All Organisms → cellular organisms → Bacteria → Acidobacteria	96841	Open in IMG/M
3300014200\|Ga0181526_10864104	Not Available	569	Open in IMG/M
3300014489\|Ga0182018_10005609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10029	Open in IMG/M
3300014489\|Ga0182018_10048225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	2616	Open in IMG/M
3300014501\|Ga0182024_10037858	All Organisms → cellular organisms → Bacteria	8029	Open in IMG/M
3300014654\|Ga0181525_10015761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4834	Open in IMG/M
3300015264\|Ga0137403_10589272	Not Available	978	Open in IMG/M
3300017948\|Ga0187847_10011465	All Organisms → cellular organisms → Bacteria	5813	Open in IMG/M
3300017988\|Ga0181520_10007938	All Organisms → cellular organisms → Bacteria → Acidobacteria	15334	Open in IMG/M
3300018047\|Ga0187859_10008537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5976	Open in IMG/M
3300018085\|Ga0187772_10212291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1303	Open in IMG/M
3300018085\|Ga0187772_10264321	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1172	Open in IMG/M
3300018086\|Ga0187769_10260639	Not Available	1291	Open in IMG/M
3300018086\|Ga0187769_10994642	Not Available	635	Open in IMG/M
3300018088\|Ga0187771_10001273	All Organisms → cellular organisms → Bacteria	16695	Open in IMG/M
3300018088\|Ga0187771_10223535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1566	Open in IMG/M
3300019240\|Ga0181510_1236588	Not Available	654	Open in IMG/M
3300019258\|Ga0181504_1053701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	629	Open in IMG/M
3300019260\|Ga0181506_1501457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	905	Open in IMG/M
3300019264\|Ga0187796_1049392	Not Available	525	Open in IMG/M
3300019264\|Ga0187796_1049392	Not Available	525	Open in IMG/M
3300019278\|Ga0187800_1231939	Not Available	647	Open in IMG/M
3300019278\|Ga0187800_1291966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	679	Open in IMG/M
3300019786\|Ga0182025_1114879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	911	Open in IMG/M
3300019786\|Ga0182025_1174030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1613	Open in IMG/M
3300019786\|Ga0182025_1321765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1821	Open in IMG/M
3300020582\|Ga0210395_10721188	Not Available	745	Open in IMG/M
3300021088\|Ga0210404_10401750	Not Available	766	Open in IMG/M
3300021151\|Ga0179584_1215923	Not Available	568	Open in IMG/M
3300021151\|Ga0179584_1473432	Not Available	763	Open in IMG/M
3300021170\|Ga0210400_10186582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1682	Open in IMG/M
3300021178\|Ga0210408_10000032	All Organisms → cellular organisms → Bacteria	207520	Open in IMG/M
3300021388\|Ga0213875_10000015	All Organisms → cellular organisms → Bacteria → Acidobacteria	280499	Open in IMG/M
3300021402\|Ga0210385_10000568	All Organisms → cellular organisms → Bacteria → Acidobacteria	25709	Open in IMG/M
3300021402\|Ga0210385_10309609	Not Available	1172	Open in IMG/M
3300021402\|Ga0210385_10383117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1054	Open in IMG/M
3300021402\|Ga0210385_11083613	Not Available	615	Open in IMG/M
3300021407\|Ga0210383_10179389	All Organisms → cellular organisms → Bacteria → Acidobacteria	1807	Open in IMG/M
3300021407\|Ga0210383_11794117	Not Available	500	Open in IMG/M
3300021559\|Ga0210409_11410913	Not Available	572	Open in IMG/M
3300022502\|Ga0242646_1035395	Not Available	527	Open in IMG/M
3300022502\|Ga0242646_1036110	Not Available	523	Open in IMG/M
3300022531\|Ga0242660_1026771	Not Available	1133	Open in IMG/M
3300022531\|Ga0242660_1129581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	644	Open in IMG/M
3300022712\|Ga0242653_1105385	Not Available	520	Open in IMG/M
3300022728\|Ga0224566_100435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3462	Open in IMG/M
3300023259\|Ga0224551_1084685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	558	Open in IMG/M
3300024176\|Ga0224565_1048328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	500	Open in IMG/M
3300026214\|Ga0209838_1031552	Not Available	754	Open in IMG/M
3300026557\|Ga0179587_10921442	Not Available	576	Open in IMG/M
3300027104\|Ga0208095_1011049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	633	Open in IMG/M
3300027609\|Ga0209221_1059226	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1009	Open in IMG/M
3300027619\|Ga0209330_1000021	All Organisms → cellular organisms → Bacteria	80388	Open in IMG/M
3300027619\|Ga0209330_1002220	All Organisms → cellular organisms → Bacteria	5134	Open in IMG/M
3300027678\|Ga0209011_1100101	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	844	Open in IMG/M
3300027767\|Ga0209655_10182539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	692	Open in IMG/M
3300027817\|Ga0209112_10010232	All Organisms → cellular organisms → Bacteria → Proteobacteria	2611	Open in IMG/M
3300027842\|Ga0209580_10009720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	4126	Open in IMG/M
3300027889\|Ga0209380_10419145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	784	Open in IMG/M
3300027889\|Ga0209380_10666774	Not Available	599	Open in IMG/M
3300027908\|Ga0209006_10014150	All Organisms → cellular organisms → Bacteria	7227	Open in IMG/M
3300027968\|Ga0209061_1010170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	6333	Open in IMG/M
3300027986\|Ga0209168_10045893	All Organisms → cellular organisms → Bacteria	2351	Open in IMG/M
3300028747\|Ga0302219_10037547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1809	Open in IMG/M
3300029944\|Ga0311352_10342609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1236	Open in IMG/M
3300030054\|Ga0302182_10005919	All Organisms → cellular organisms → Bacteria	5600	Open in IMG/M
3300030528\|Ga0210277_10443567	Not Available	621	Open in IMG/M
3300030528\|Ga0210277_10951216	Not Available	507	Open in IMG/M
3300030573\|Ga0210272_1207733	Not Available	583	Open in IMG/M
3300030573\|Ga0210272_1305045	Not Available	514	Open in IMG/M
3300030573\|Ga0210272_1305045	Not Available	514	Open in IMG/M
3300030589\|Ga0210255_10368265	Not Available	722	Open in IMG/M
3300030618\|Ga0311354_10232113	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1950	Open in IMG/M
3300030625\|Ga0210259_11091959	Not Available	580	Open in IMG/M
3300030627\|Ga0210269_10282722	Not Available	572	Open in IMG/M
3300030730\|Ga0307482_1279505	Not Available	532	Open in IMG/M
3300030738\|Ga0265462_11850174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	581	Open in IMG/M
3300030740\|Ga0265460_12022309	Not Available	600	Open in IMG/M
3300030741\|Ga0265459_12966847	Not Available	592	Open in IMG/M
3300031057\|Ga0170834_105846954	Not Available	649	Open in IMG/M
3300031057\|Ga0170834_110285521	Not Available	2139	Open in IMG/M
3300031122\|Ga0170822_11784755	Not Available	830	Open in IMG/M
3300031708\|Ga0310686_106465938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	927	Open in IMG/M
3300031708\|Ga0310686_113275165	All Organisms → cellular organisms → Bacteria	3383	Open in IMG/M
3300031708\|Ga0310686_116395821	All Organisms → cellular organisms → Bacteria	6565	Open in IMG/M
3300031715\|Ga0307476_10185445	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1506	Open in IMG/M
3300032515\|Ga0348332_11369271	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	886	Open in IMG/M
3300032805\|Ga0335078_10571373	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1434	Open in IMG/M
3300032805\|Ga0335078_10751902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1198	Open in IMG/M
3300032895\|Ga0335074_10001727	All Organisms → cellular organisms → Bacteria	29501	Open in IMG/M
3300032895\|Ga0335074_10013961	All Organisms → cellular organisms → Bacteria	11278	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.07%
Aquatic	Environmental → Aquatic	12.30%
Plants	Host-Associated → Plants	0.82%
Fungi	Host-Associated → Fungi	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.51%
Freshwater	Environmental → Aquatic → Freshwater	12.30%
Peat	Environmental → Terrestrial → Peat	4.10%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.46%
Roots	Host-Associated → Plants → Roots	0.82%
Mycelium	Host-Associated → Fungi → Mycelium	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.80%
Loam	Environmental → Terrestrial → Soil → Loam	19.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.30%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.10%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.82%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.02%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.10%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.28%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.28%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.28%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.28%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	3.28%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.28%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.64%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.64%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.82%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.82%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001087	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002677	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022728	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300026214	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030573	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO036SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030589	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR019SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030625	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030627	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE095SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12677J13195_100014014	3300001087	Forest Soil	MTEHEQNRVLGRLGARELTSEEVEMALGFGPEHTNVITFNPVTGRDGDG*
JGI12712J15308_100742262	3300001471	Forest Soil	MSEQENNRVLGRLGARELTREEVEMSSGPEHTHVITFNPITGRDGDG*
JGI12635J15846_102768582	3300001593	Forest Soil	MKHNDNRVLGRTGARELTAEELARISAAGPLHTNVITVNPKTGQRDGDG*
Ga0005475J37263_1032151	3300002677	Forest Soil	MSTQDDNRVLGRLGARELTREEVELVSGSGFEHTNVITFNPVTGQRDGDG*
Ga0062384_1000089383	3300004082	Bog Forest Soil	MNRDNNRVLSRKGARELTAQEVELVSGSGPYNTNVITVNPKTGQRDGDG*
Ga0058903_14107162	3300004103	Forest Soil	MSNHDDNRVLGRLGARELTREEVELVSGSGFEHTNVITFNPVTGQRDGDG*
Ga0058899_101317833	3300004631	Forest Soil	MKRNDKRVLGRTGARELTPQELACIIASQPVITDIITFNPFTGERDGDG*
Ga0058899_121528931	3300004631	Forest Soil	MKRNEKRVLGRTGARELTPQELACIIASQPVITDIITFNPVTGERDGDG*
Ga0070737_100118894	3300005524	Surface Soil	MPTNEQKPEERRVLARVGARELTPEEAARVAGGGPQHTNVITYNPTTGRDGDG*
Ga0070735_100090869	3300005534	Surface Soil	MKRNENRVLSRTGARELTPEELARISAGGPLITNVITFNPKTGQRDGDG*
Ga0070733_100354826	3300005541	Surface Soil	MKRSDNNRVLGRTGARELTQEELARISAGGPYGTNVITVNPLTGQRDGDG*
Ga0070732_100088188	3300005542	Surface Soil	MNGSNRVLPRAGARELSAEDVELVSGGNFNTNVITFNPFTGARDGDGYVMES*
Ga0070766_102946992	3300005921	Soil	MSEQENNRVLGRVGARELTPEELETVIGMGSVHTNVITFNPVTGRDGDG*
Ga0070766_103721452	3300005921	Soil	MSNHEDNRVLGRLGARELTPEEVEMVGPEHTNVITFNPVTGRDGDG*
Ga0066787_100357452	3300005950	Soil	MSEQENNRVLGRLGARELTPEEVESVIGMGTVHTNVITFNPVTGRDGDG*
Ga0070716_1010952363	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNDSNRVLSRAGAREMSAEEVELVSGGDFHTNVITFNISTGARDGDGYVL*
Ga0070765_1002704092	3300006176	Soil	MAQIKKEKLMSNHEDNRVLGRLGARELTPEEVEMVGPEHTNVITFNPVTGRDGDG*
Ga0116105_10000983	3300009624	Peatland	MKRNDDNRVLGRTGARELTPEELARISAGGPLITNVITINPKTGQRDGDG*
Ga0116117_10030912	3300009635	Peatland	MTKNNRVLARNGARELTPEEVLRVSGGGPLHTNVISVNPVTGQRDGDG*
Ga0116135_10153603	3300009665	Peatland	MKRNENRVLGRTGARELTAEELARISAAGPLNTNVITVNPKTGQRDGDG*
Ga0116101_10433821	3300009759	Peatland	VRTPDGENMTKNNRVLARNGARELTPEEVLRVSGGGPLHTNVISVNPVTGQRDGDG*
Ga0126384_103206242	3300010046	Tropical Forest Soil	MNDSNRVLTRIGARELSAEEVELINGGVHTNVITWNPFTGARDGDGCVMES*
Ga0126376_100029318	3300010359	Tropical Forest Soil	VNDSNRVLTRAGARELSEEEVELINGGVHTNVITWNPFTGARDGDGCVMES*
Ga0126372_100994755	3300010360	Tropical Forest Soil	MKGKRRMNDSKRVLTRAGAREMSAQEVELVNGGVHTNVITWDPFTGARDGDGYVMES*
Ga0150983_102681822	3300011120	Forest Soil	MKRDDKRVLGRTGARELTAQELASIIASKPVMTDIITFNPVTGKRDGDG*
Ga0150983_102703711	3300011120	Forest Soil	MERDDKRVLGRTGARELSTQELACIIAGRPVMTDVITFNPITGKRDGDG*
Ga0150983_156182571	3300011120	Forest Soil	RVLGRIGARELSPEELQQVSGGGPFHTNVITFNPWTGQRDGDGI*
Ga0150983_162357453	3300011120	Forest Soil	GRLGARELTREEVELVSGSGFEHTNVITFNPVTGQRDGDG*
Ga0153933_10822271	3300011411	Attine Ant Fungus Gardens	MSTPEKKPEERRVLARVGARELTPEEVARVAGAGPQHTNVITVNPVTGQRDGDG*
Ga0137385_106259972	3300012359	Vadose Zone Soil	MNSQDNRVLGRIGARELSPEELEKVSGGLPVHTNVITFNPVTFQRDGDGI*
Ga0137413_102303302	3300012924	Vadose Zone Soil	MSTTKDNRVLGRLGARELTPEEVAHVSGAGPLQTNIITVKPSTGQRDGDG*
Ga0181531_1000005691	3300014169	Bog	MVQNHYKEKLMSEQENNRVLGRLGARELTPEEVETAMGMGSLHTNVITFNPVTGRDGDG*
Ga0181526_108641041	3300014200	Bog	MTNKNNRVLARKGARELTPEEVLRVSGGGPLHTNVITFNPTTGQRDGDG*
Ga0182018_100056095	3300014489	Palsa	MSEQENNRVLGRIGARELTPEEVETVIGMGPAHTNVITFNPVTGRDGDG*
Ga0182018_100482253	3300014489	Palsa	MSEQENNRVLGRLGARELTREEVEMVVGFGPEHTNVITFNPVTGRDGDG*
Ga0182024_100378583	3300014501	Permafrost	MKADDKRVLSRTGARELTPHELEQVSGSGPQNTNVITFNPSTGQRDGDG*
Ga0181525_100157612	3300014654	Bog	MKRDDKRVLGRTGARELSPQELACIIAGRPVMTDVITFNPVTGKRDGDG*
Ga0137403_105892725	3300015264	Vadose Zone Soil	RELSPEEVEKVSGGLPVHTNVITFNPVTFQRDGDGI*
Ga0187847_100114656	3300017948	Peatland	MKRNDDNRVLGRTGARELTPEELARISAGGPLITNVITINPKTGQRDGDG
Ga0181520_100079383	3300017988	Bog	MTNKNNRVLARKGARELTPEEVLRVSGGGPLHTNVITFNPTTGQRDGDG
Ga0187859_100085376	3300018047	Peatland	MKRNENRVLGRTGARELTAEELARISAAGPLNTNVITVNPKTGQRDGDG
Ga0187772_102122913	3300018085	Tropical Peatland	MKRDNKRVLSRTGARELTPEEVELVGGSGPYITNVITINPKTGQRDGDG
Ga0187772_102643213	3300018085	Tropical Peatland	MKRNDNNRVLGRTGARELSPEELARISAGGPYHTNVITINPLTGQRDGDG
Ga0187769_102606392	3300018086	Tropical Peatland	MKHDRNRVLGRSGARELTPEQVARIMASGPQMTDVITFNPITGQRDGDGWE
Ga0187769_109946421	3300018086	Tropical Peatland	MKRNNDRVLGRTGARELTPEEVARVSGSGPYHTNVITVNPVTGQRDGDG
Ga0187771_1000127312	3300018088	Tropical Peatland	MKRNDNRVLGRTGARELTPEELARLSGGFPVHTLVITLNPKTGHLDGDGLSSEV
Ga0187771_102235352	3300018088	Tropical Peatland	MKRNSDRVLGRTGARELTPEEVDRVSGSGPEHTNVITFNPVTGERDGDG
Ga0181510_12365881	3300019240	Peatland	MTKNNRVLARNGARELTPEEVLRVSGGGPLHTNVISVNPVTGQRDGDG
Ga0181504_10537012	3300019258	Peatland	MKRDDKRVLGRTGARELSPQELACIIAGRPVMTDVITFNPVTGKRDGDG
Ga0181506_15014572	3300019260	Peatland	MKRDDKRVLGRTGARELSPQELACIVAGRPVMTDVITFNPVTGKRDGDG
Ga0187796_10493921	3300019264	Peatland	SKRVLGRTGARELTPEELAQLSGSGTVHTMYITVNPKTGLVDGDAFGT
Ga0187796_10493922	3300019264	Peatland	MKRDDNRVLGRTGARELTPEELARLSGGFPVHTLVITLNPKTGHLDGDGLSSEV
Ga0187800_12319392	3300019278	Peatland	MKRNEKRVLGRTGARELTPQELACIVASQPVITDIITFNPVTGERDGDG
Ga0187800_12919663	3300019278	Peatland	VKPQQKEEAMKRNDNNRVLGRTGARELSPEELARISAGGPYHTNVITINPLTGQRDGDG
Ga0182025_11148793	3300019786	Permafrost	MKADDKRVLSRTGARELTPHELGQVSGSGPQNTNVITFNPSTGQRDGDG
Ga0182025_11740304	3300019786	Permafrost	MKADDKRVLSRTGARELTPHELEQVSGSGPQNTNVITFNPSTGQRDGDG
Ga0182025_13217651	3300019786	Permafrost	MKADDKRVLSRTGARELTPHELETSKRQWAAKHNVITFNPSTGQRDARWLTKEKTRK
Ga0210395_107211882	3300020582	Soil	MERDDKRVLGRTGARELSPQELACIIAGRPVMTDVITFNPITGKRDGDG
Ga0210404_104017503	3300021088	Soil	KQKKENYMNSQDNRVLGRIGARELSPEELQQVSGGGPFHTNVITFNPWTGQRDGDGI
Ga0179584_12159232	3300021151	Vadose Zone Soil	MNSQDNRVLGRIGARELSPEELEKVSGGLPVHTNVITFNPVTFQRDGDGI
Ga0179584_14734322	3300021151	Vadose Zone Soil	MSNSQNNRVLGRIGARELSPEELEKVSGGLPVHTNVITFNPVTFQRDGDGI
Ga0210400_101865824	3300021170	Soil	MSNHDDNRVLGRLGARELTREEVELVSGSGFEHTNVITFNPVTGQRDGDG
Ga0210408_1000003216	3300021178	Soil	MSDQKDTRVLNRIGARELTAREVEIISGGLFHTNVITFNPWTGQRDGDG
Ga0213875_1000001549	3300021388	Plant Roots	MQDHEKQEGRRVLARLGARELTPEEVARVAGAGPRQTNVITVNPSTGQRDGDG
Ga0210385_1000056822	3300021402	Soil	MRTNEKKPEERRVLARVGARELTPEEMARVAGAGPEHTNVITYNPTTGRDGDG
Ga0210385_103096092	3300021402	Soil	MTEHEQNRVLGRLGARELTSEEVEMALGYGPEHTNVITFNPVTGRDGDG
Ga0210385_103831171	3300021402	Soil	MPTLEKHEERRVLARVGARELTPEEVARVAGGGPRQTNVITVNPSTGQRDGDG
Ga0210385_110836132	3300021402	Soil	MKRDDKRVLGRTGARELTAQELASIIASKPVMTDIITFNPVTGKRDGDG
Ga0210383_101793893	3300021407	Soil	MKRNEKRVLGRTGARELTPQELACIIASQPVITDIITFNPFTGERDGDG
Ga0210383_117941171	3300021407	Soil	MERDDKRVLGRTGARELSTQELACIIAGRPVMTDVITFNPITGKRDGDG
Ga0210409_114109131	3300021559	Soil	MKRSDNNRVLGRTGARELTQEELARISAGGPYGTNVITVNPLTGQRDGDG
Ga0242646_10353952	3300022502	Soil	MTNTNNRVLARKGARELTPEEVLRVSGGGPLHTNVITFNPTTGQRDGDG
Ga0242646_10361102	3300022502	Soil	MTKNNRVLARNGARELTPEEVLRVSGAAPAQTNAISFNPITGQRDGDA
Ga0242660_10267713	3300022531	Soil	MNSQDNRVLGRIGARELSPEELQQVSGGGPFHTNVITFNPWTGQRDGDGI
Ga0242660_11295811	3300022531	Soil	INLINQGGNMKRDDKRVLSRTGARELTPQEVEQVSGSGSQHTNVITFNPTTGQRDGDG
Ga0242653_11053851	3300022712	Soil	MKRSDNNRVLGRTGARELTLEELARISAGGPYGTNVITVNPLTGQRDGDG
Ga0224566_1004353	3300022728	Plant Litter	MKHNDNRVLGRTGARELTAEELARISAAGPLNTNVITVNPKTGQRDGDG
Ga0224551_10846851	3300023259	Soil	GRLGARELTREEVEMVVGFGPEHTNVITFNPVTGRDGDG
Ga0224565_10483283	3300024176	Plant Litter	NDNRVLGRTGARELTAEELARISAAGPLNTNVITVNPKTGQRDGDG
Ga0209838_10315521	3300026214	Soil	MSEQENNRVLGRLGARELTPEEVESVIGMGTVHTNVITFNPVTGRDGDG
Ga0179587_109214422	3300026557	Vadose Zone Soil	MLKTKDNRVLGRLGARELNPEEVARVSGAGPLQTNIISVNPSTGQRDGDG
Ga0208095_10110493	3300027104	Forest Soil	KEKCMSTQDDNRVLGRLGARELTREEVELVSGSGFEHTNVITFNPVTGQRDGDG
Ga0209221_10592262	3300027609	Forest Soil	MKHNDNRVLGRTGARELTAEELARISAAGPLHTNVITVNPKTGQRDGDG
Ga0209330_100002112	3300027619	Forest Soil	MTEHEQNRVLGRLGARELTSEEVEMALGFGPEHTNVITFNPVTGRDGDG
Ga0209330_10022203	3300027619	Forest Soil	MAQIKKEKLMSNHEDNRVLGRLGARELTPEEVEMVGPEHTNVITFNPVTGRDGDG
Ga0209011_11001012	3300027678	Forest Soil	MSNHDDNRVLGRLGARELTREEVELVSGSGFEHTNVITFNPLTGQRDGDG
Ga0209655_101825392	3300027767	Bog Forest Soil	MNRDNNRVLSRKGARELTAQEVELVSGSGPYNTNVITVNPKTGQRDGDG
Ga0209112_100102322	3300027817	Forest Soil	MPIPEKQGKEKRVLARMGARELTPEEAARVAGAGPQITNVITVNPKTGQRDGDG
Ga0209580_100097205	3300027842	Surface Soil	MNGSNRVLPRAGARELSAEDVELVSGGNFNTNVITFNPFTGARDGDGYVMES
Ga0209380_104191452	3300027889	Soil	MSNHEDNRVLGRLGARELTPEEVEMVGPEHTNVITFNPVTGRDGDG
Ga0209380_106667741	3300027889	Soil	MSEQENNRVLGRVGARELTPEELETVIGMGSVHTNVITFNPVTGRDGDG
Ga0209006_100141506	3300027908	Forest Soil	MSEQENNRVLGRLGARELTREEVEMSSGPEHTHVITFNPITGRDGDG
Ga0209061_10101703	3300027968	Surface Soil	MPTNEQKPEERRVLARVGARELTPEEAARVAGGGPQHTNVITYNPTTGRDGDG
Ga0209168_100458934	3300027986	Surface Soil	MKRNENRVLSRTGARELTPEELARISAGGPLITNVITFNPKTGQRDGDG
Ga0302219_100375471	3300028747	Palsa	MKRDNNRVLSRTGARELTPREVEIVSGSGPLITNVITINPKTGQRDGDG
Ga0311352_103426091	3300029944	Palsa	RLGARELTPEEVESVIGMGTVHTNVITFNPVTGRDGDG
Ga0302182_100059194	3300030054	Palsa	MKRDNNRVLSRTGARELTPQEVELVSGSGPLITNVITINPKTGQRDGDG
Ga0210277_104435671	3300030528	Soil	MTKNNRVLARNGARELTPEEVLRVGGGAPLQTNVISFNPITGQRDGDA
Ga0210277_109512162	3300030528	Soil	MKRNGKRVLGRTGARELTPQELACIIASQPVITDIITFNPVTGERDGDG
Ga0210272_12077331	3300030573	Soil	MNRNEKRVLGRTGARELTPQELACIIASQPVITDIITFNPLTHERDGDG
Ga0210272_13050451	3300030573	Soil	MTQKFRKEEHMSNHEDNRVLGRLGARELTPEEVELVNGSGPEQTHVITFNPVTGRDGDG
Ga0210272_13050452	3300030573	Soil	EHMSNHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Ga0210255_103682652	3300030589	Soil	MNRDNNRVLNRTGARELTPEEVERVSGSGPQNTNVITFNPKTGQRDGDG
Ga0311354_102321131	3300030618	Palsa	KLMSEQENNRVLGRLGARELTPEEVESVIGMGTVHTNVITFNPVTGRDGDG
Ga0210259_110919592	3300030625	Soil	RKEEHMSNHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Ga0210269_102827221	3300030627	Soil	NHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Ga0307482_12795051	3300030730	Hardwood Forest Soil	MKRNEKRVLGRTGARELTPQELAGIIASQPVITDIITFNPVTGERDGDG
Ga0265462_118501742	3300030738	Soil	MSNHEDNRVLGRLGARELTPEEVEMVIGFGPEHTNVITFNPVTGRDGDG
Ga0265460_120223091	3300030740	Soil	QKSRKEEHMSNHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Ga0265459_129668472	3300030741	Soil	TQKSRKEEHMSNHEDNRVLGRLGARELTPEEVELVSGSGPEHTNVITFNPVTGKRDGDG
Ga0170834_1058469541	3300031057	Forest Soil	MTNKNSRVLARKGARELTPEEVLRVSGGGPLHTNVISVNPVTGQRDGDG
Ga0170834_1102855216	3300031057	Forest Soil	MSNGHDNQQANRVFSRLGARELTPNEVARVSQAGLEHTNVITFNPVTLQIDGDG
Ga0170822_117847552	3300031122	Forest Soil	MSNHDDNRVLGRLGARELTREEVELVSGSGFEHTNVITLNPVTGQRDGDG
Ga0310686_1064659382	3300031708	Soil	MKRNEKRVLGRTGARELTPQELASIIASQPVITDIITFNPFTGERDGDG
Ga0310686_1132751653	3300031708	Soil	MSEHEHNRVLGRLGARELTPEEVELVLGNGPEHTNVITFNPVTGRDGDG
Ga0310686_1163958215	3300031708	Soil	MTKNNRVLARNGARELTPEEVLRVSGGGPEQTNVISVNPVTGQRDGDG
Ga0307476_101854453	3300031715	Hardwood Forest Soil	MKRNEKRVLGRTGARELTPQELACIIASQPVITDIITFNPVTGERDGDG
Ga0348332_113692712	3300032515	Plant Litter	MQRDDKRVLGRTGARVLTAQELASIIASKPVMTDIITFNPVTGKRDGDG
Ga0335078_105713731	3300032805	Soil	VMSNNSSNRVLSRIGARQLKLEEVERVSGSGPQHTNVITVNPKTGQRDGDG
Ga0335078_107519023	3300032805	Soil	MKNSETKRVLSRIGARLLTPQEVERVSGSGPVHTNVCTVINPTTGKADGDGCS
Ga0335074_1000172725	3300032895	Soil	MSTPEKKGNEGRVLARVGARELTPEEMAHVAGAGPQITNVITVNPKTGQRDGDG
Ga0335074_1001396116	3300032895	Soil	MSTPEKKGNEGRVLARVGARELTPEEMARVAGAGPRITNVITVNPKTGQRDGDG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071554

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences