Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10242953 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10242953 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1626
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

1626

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F006619	Metagenome / Metatranscriptome	368	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015987	Metagenome / Metatranscriptome	250	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_102429531	F015987	N/A	MSQITQTKLNKLNVFELYKHYAALEQSLPLLTPESQDLAKSELETCADLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLGWLRR
Ga0129333_102429532	F013517	N/A	MFESLFAAVIPVMKDLLWAAAGMLLTYLINKVQSQFN*
Ga0129333_102429533	F002738	N/A	MSIDTYGLPSDQYAKFFKDNVRFAARLYLDTCNILSAEGVGNVDFKTVSNMYQEAVYATNDDCRRYQKTNNPDALKDNDPYAILTPSREELMVEIQAVNAKVETLTNYVTELVKVTTKGLENLLN*
Ga0129333_102429534	F043890	N/A	MQKTYSLAACNPNSINKLQIDFIEETDGSASLHIEWDETDPELQWWTDLGEEGQKSFMIKTLTNVCDSHVD*
Ga0129333_102429535	F006619	N/A	ELDDNEEQQPVFGEPTCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTEVRNTSASGTPDKCVAWWYAPPSDAHSNGRFMLLHTKSGAQAPMTHWRHYKPKEVFTQNDAWDLFFNMMEAGYVPFPGTALPQLKAITKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10242953

Overview

Ecosystem & Geography

Associated Families

Sequences