Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10069570 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10069570 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3270
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3270

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005745	Metagenome / Metatranscriptome	391	Y
F041724	Metagenome / Metatranscriptome	159	Y
F063708	Metagenome	129	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1006957010	F004666	AGGA	MATKREYLAQKGITVGRRGRFSAAAKQALSEAEKQGIKFTAETKTAKN*
Ga0129333_1006957011	F095357	GGA	MVKSKYNSILKKGGTVATKEHKVGELLANSVEDHFFNPATLAYYLSQQPTWTIDRVMEVVAWIIEKNARRAEVEAGNGIQSEGLILAYNLDKLVDRMKSAKQFEHIKLP*
Ga0129333_100695702	F041724	AGGA	MADRLELNDRGSFLDDENEMVIGAIIQEISEQLFEDWNNSNLDEGTFYADWKIAEMSNDNYLKGRFNQFYDLTPEDDEYLEWDEEK*
Ga0129333_100695704	F063708	AGGA	MNQLIEYMKLHLISLEQDLESNPESINVIDIPGQIHATKHLLSVANDILAKTKEN*
Ga0129333_100695705	F005745	AGGAG	MELTPSLQRQVDHGSSGLDILHGALKVLMVDAEDELRMAQETEEENDYDDAMESMERKYWEGQCDALGHVYGLTYALSFAIAERNKQ*
Ga0129333_100695707	F000441	AGGAG	MKMSDNYINEQLSKAQQLLWGGSETENIEAHNIISKLIRDRIEQVGDRG*
Ga0129333_100695708	F001019	GAG	LGIGAKMSIYEPSLEILEVAYEVSPGGVRTFEVYDKDESDPVSIPIYETESLTDAVEYCYNLGKDFIVRTYAEWEMRELLADL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10069570

Overview

Ecosystem & Geography

Associated Families

Sequences