Scaffold Ga0129333_10034849

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10034849
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4751
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019960	Metagenome / Metatranscriptome	226	Y
F032264	Metagenome	180	Y
F044373	Metagenome / Metatranscriptome	154	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1003484910	F097262	AGGCGG	MKCMTCNERTYVVNVIKMAGGLRRQRKCKSCGAGAYSAEVWLKATANGAEPVYTKEEAALIKKKAVNARRANEDRRKDDAS*
Ga0129333_1003484912	F032264	N/A	LIDYLHVMIARSDWHGVSDVANDLRELEAEQREKN*
Ga0129333_100348495	F019960	N/A	MAVLLTFFIVMPIIGFMLYDLHYATQAAVYEAKKMRQLRKEILEERLYGK*
Ga0129333_100348499	F044373	AGGAGG	MLRDGYFIKEAPPKIGAHYTPQFYQKPATPEERFVQDVMLGITPYKESPVTKLLGRLLRI