Scaffold Ga0129333_10031996

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10031996
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4966
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016958	Metagenome / Metatranscriptome	243	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1003199611	F026861	AGG	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVETTNTKGKN*
Ga0129333_100319965	F016958	AGG	MNLPTKENVYYFIDLYRKSLKKNQRVKITCDVLSIDGYLQGTAPLRD*
Ga0129333_100319968	F085710	AGG	MDYNDYYDEIYTDIYLEFGSEAVSDPAHAQNLLGKSQS*
Ga0129333_100319969	F029721	AGGA	MRSYSIEDLLVGQFYKPSSLARRFQGGEINYATKREDIWVGENYQAYSIRYRVQNSMKTEWATIAVKVSDL*