Scaffold Ga0129333_10021483

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10021483
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6128
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F013526	Metagenome / Metatranscriptome	270	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F061891	Metagenome / Metatranscriptome	131	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100214831	F061891	GGAGG	MEYTYSLTTSYDGSLVNTLRVSDLLEAVNAWDKCVDFGEAKEYATYNLSDPTG
Ga0129333_1002148310	F029721	N/A	MKGKLMRAYSIEDLLVGQFYRPTSLARRYNGGEINHAEKRDDVWVGEDFQAYAIRFNGNRWATIAVRIKD*
Ga0129333_1002148312	F017484	N/A	VSLANNRPATENESLLKGELKMSNLEIFEMNESGAGWVSLENASASTKLDLELALLTKAEVKMLCFKCHIEIPRGNVCVNHKNVKGAIYFD*
Ga0129333_1002148314	F085710	AGG	MDYNDYYDEVYLDIYLEFGADAVSDPSYAEDLLSKSQK*
Ga0129333_100214834	F005092	AGGA	MDKLEYALRTIQNCDLCYGLGYHGYANGEDYDVEDCECNPYGLILEDGEVIYDNGLLSEPQLFATMEAN*
Ga0129333_100214836	F013526	AGGA	MKKNVLISFVVEADTDLQAVFALNKILFQLPDSDLARFDVFDVVECDGVGVK*
Ga0129333_100214839	F026861	AGGA	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVSTTTPKKGNN*