Scaffold Ga0129333_10009292

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10009292
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9295
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F028151	Metagenome	192	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000929213	F028151	GGAG	MNTWLEGRDMGFVIMWAIIGLTFAAWIIHEIRNTAFQNGYWKGRADGWNSHRRLTNTKTKSDEVFDYDKQN*
Ga0129333_1000929215	F002357	GGAG	MAFNLEDYEDVATLNKWFISNFPNGRSDISVISHDPEKGYILVQATLWRDSNDASPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMEIVKADQTFKEKLEVRQNMYGKPGSKSAQIETILRDSFEADKPKDTVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE*
Ga0129333_1000929217	F002162	AGGA	MPNYEYFCDSEGSMIVLDLPMDHKIPHCQVCNARLRRIYTAVPTIFKGTGWAGKLG*
Ga0129333_1000929218	F037698	N/A	MDVCGNGVPYMCDSHDELTHEINWAYQNELHKQWLADNPDAGYIGWMSI*
Ga0129333_100092924	F000468	AGG	MTVWTPEWKLTVAGTEYTNLTISDITHQAGRDDIYTQPNPSYLQCTIVALSGQTFPFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGATGSIATVVEYTILAMGSLVKLAKEIYNGTISQDEDGNQIYDLLSSVLLGAWNDVPAASTWAGYSATETWATALNLGLGEIDQPGLYTMENRDASPDTVYNIASQIANSAFGYIYEDNEGNIGYADADHRQTYLITNGYVDLSANNAIGSGLRTTTKAADIRNDIFINYGNNFGSQKTATSASSIALYGYKSESIQSVIHSAVDAQEVADRYISLRAFPQPIFDSITFPITNPEIDNSDRDNLLSVFMGMPLNIADLPTQINNGEFSGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGEAWNTLSNTLTWEYATIVA*