Scaffold Ga0129333_10003944

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10003944
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13908
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F040073	Metagenome	162	Y
F041147	Metagenome / Metatranscriptome	160	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000394410	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKIATQRQIAIKGLVADAMELMKDNYSHKLPAIND*
Ga0129333_1000394412	F002333	N/A	MTTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRDLIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDPAKITTLLQSDQTDIGHLVAPDGMRLTNRPIDMDSELDDGTEQKPIFGEPTCSCGSFQRQLSNLSDFQEEIQGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGRFVLLYTNQGAQAPLTHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGTSLPQLKAAVKKQ*
Ga0129333_1000394415	F002738	N/A	MIMSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNVDFKTVLDMYQEAVYTANDDCRRYQKSNNPDVLKEVTADLYGISPSREELMDEIQSLSAKVESLVDYIGNLVTVTTAGLAGIATTLDDKID*
Ga0129333_1000394416	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMLLTYVLNKFQTQFI*
Ga0129333_1000394417	F001018	N/A	MAQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAKAELESCADLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVAEEVTTTKRVVLRSMSGEVLSERTEPKTTTKVLPNLDAIRSAYQEGQQLPHGVKVVQEYSVRSKRIFSEPKLDLVPSEYPGEFLSEDPSAD*
Ga0129333_1000394418	F025982	N/A	MSCHEHAIKDFDLQLEMNGLQMTMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYWTQREKAGK*
Ga0129333_1000394421	F008128	N/A	MEPVTVPKLSVSFAIDLELEYNSFGGKTSDEIAEALQDELDDLLFELPNVTGVYTSCTAIQFND*
Ga0129333_1000394423	F041147	N/A	MDTSQEPVDTIKQWQDWYRKHRIVAEIDVPLVTKESRENLHETSNATNSLAEYCIAMSFQKAKEYFADTIAEFANELSGKELYKAFYAAAMDNMDCVEKEYNKAKQLVDMLRCNNVAP*
Ga0129333_100039445	F002985	N/A	MSYVIACWRWGTPHAITANKETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK*
Ga0129333_100039448	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFMRGVGHLELNIIERMYEISKQCLALYQGEPAIRLPLQQDDLEEVA*