Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10000196 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10000196 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42962
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (75.38%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42962

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (75.38%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F025725	Metagenome / Metatranscriptome	200	Y
F043922	Metagenome	155	Y
F057363	Metagenome / Metatranscriptome	136	Y
F099272	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100001964	F006261	GAGG	MATISSGYTTTVPIQVDNPALWSFTAPEDPTIRVTGVDVLQPLNNTIVESYGVFKPLGATKTVVVAQSIYGIDGTYRFTIKGDTQWDELYPVLTYQGTLHVHDPLGRQKYVRFVDRKWTESGPIANLVRVVDVTYFEVDAP*
Ga0129333_1000019647	F099272	AGGTGG	MKCYNCGSEYRLTLIKGKFYCFGCEADASLEAVGLVRPIKEKRTA*
Ga0129333_1000019651	F014841	N/A	MANEEELKPSVIDDALAQIGRIAFIEPAICTGWVLVSEWMGEGDKDYWTLTLADSQNPDWRHQGLIHHAIKTWEDEDDVGLKDKPTNQ*
Ga0129333_1000019660	F043922	N/A	MTSRREKIKAIQEAYAKWEESAKFTSETGASDEDEARIMDEIQTILQGNKPQSE*
Ga0129333_1000019664	F025725	AGG	MKSIIDDTTEILTSMNLRVIPVETPPGYSGLQVDLPNDSQAFFVWAKIDKDDYAFRVARFWANENPFSMLMIPNLIEALARTRELARQ*
Ga0129333_100001967	F057363	AGGAG	MDKKQKAMLASYGRSFLAAVTTAFLIQGGDLFALDVDSLKTILAAGISAVLPVALRAANPNDPAFGKVADSITASVTKKLTEPTKKAPRKKAAK*
Ga0129333_100001969	F011482	AGG	LSEEFPTLGEVMRRLDELTIEVKQMNINISQTYLRKDVYESDTERITQAMDHITDRLQKMESRSEWVVRTVGALFIATVVGASMYVGQVIGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10000196

Overview

Ecosystem & Geography

Associated Families

Sequences