Scaffold Ga0129333_10000063

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000063
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63004
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (73.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001106	Metagenome / Metatranscriptome	776	Y
F005000	Metagenome / Metatranscriptome	415	Y
F013888	Metagenome / Metatranscriptome	267	Y
F035307	Metagenome	172	Y
F080044	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000006320	F000376	AGGA	MSVYQERAKECKCCGKHVPLPTILKEYNGISLCPTTFANVNEYKRLWTSTGSRPAGSIRKHFSEYVQQIVEESISNEKNIL*
Ga0129333_1000006322	F000369	N/A	MSDLEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLGYIDEWKSVVHNDINMRERAKEAVSGADQHYAMLIKEAWKTVEDADQAGQLNVKANALKLISDIETKRIGMLQSVGVLENNEIAGQVAEAERKQEILVGILKEVTSTCSKCKLEVAKRLSQITGIVEPVVIDAEQVSGS
Ga0129333_1000006324	F013888	N/A	MSIVGVLPASGKASRIGGIPKFCIPISDERSLIQWHVEKMLEVCDEVRVATRSEWVPIIQNMDMNIKIIIREPSTMSDAIKFVAGDDENVLVGMPDTFILNSINNPYKEMLKEKDADIVLGSWDCTEDLKGKVGQILLFNDKVIGSQDKSINCNYMDMWGAILFRNNMVKYIDPKLEHPGKQLEEWINNKINIKAVKPGGQYMDIGTLKGLKQLYKEMDNA*
Ga0129333_1000006333	F080044	GAGG	MPDLSEFLNNNNPKDYDLEDLPGIRACLKCDEDVNGAKWDPVELLMYWKCSKGHETIHRMS*
Ga0129333_1000006341	F005000	N/A	MTTHKRIKRFQIDVEFLDDSDMIRLKAQYESLLTQQMRSKGYVRVLDIDPAFSVEFTGETWKFLMTIHGVYVGRRKACQVEGISQNKLIPRNLHPTK*
Ga0129333_1000006362	F000258	GGAGG	MTIDYKIDMMSDLRKHLWSGLTSANIFNEEDYYSENLNANIVPILPVQQQPELDQFLSGKKHIIYDKIGMSYEENWVICCEQILLTIYATDYSEIAEIRNFITDQYRRMDESAADTNRFSGISNKFKFYSIFIADISETSPSEELAGFFSSDIVLEVKYSRHVGTDGRFL*
Ga0129333_1000006363	F035307	GGA	LDTSPLLVQAASGLQRNLSGAKGTVLKDSTVAQISAAIYYQATTIAKVTTNKGFQEKFRTILFKQIEKDFSEYIDAQARSNPKSLHHMYEWKRVGQSNSRLFKLVVNSAEGLSFSIKADFLLSKSMVPSSIGKSRYVFANKASVMEAGNPIVIRPRNAKRLVFKIDDDIVFMPEGRSVTVRKPGGGKASGRFQIAYARFFTGNLVSLSIKRSGFQQIFSSNLGKALKLPFDVKKVKYSFSANSLNVQSDTALKMAFGG*
Ga0129333_1000006366	F001106	AGGAG	MSFEALKVAELKQIAEDFAVEVEGLKNKADIIAALSEEGVTWSVYQKTQKDLEEAEDVADEILPRFDSKKEIAKDEVLVRMTRENFRYDIMGYTFTKDHPFVAMSEEKAQEIFDKEEGFRLATPKEVQEYYS*