Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10000052 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10000052 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65464
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (80.46%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

65464

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

70 (80.46%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F004788	Metagenome / Metatranscriptome	423	Y
F005476	Metagenome / Metatranscriptome	399	Y
F019960	Metagenome / Metatranscriptome	226	Y
F023296	Metagenome / Metatranscriptome	210	Y
F036199	Metagenome	170	Y
F064661	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000005230	F036199	N/A	MKNLKGNRMTIEAVNYKVIWEWINAVWAKSFVSVGCLLIGLGVGGVMAESRIVSDCKFANSFRVDIQAFSCQRKL*
Ga0129333_1000005248	F005476	N/A	MVQEYFQEALTKGGEEVDWEPGYNIHHIQSFLTTGQWLLLVAADETGKIHGAATVSFSNYPMHRVAFITLIGGKLISNKETFAQLKEILRQRGATKIQGYGREAIVRLWKRYGFEPRTTLVEVKI*
Ga0129333_1000005256	F019960	N/A	VVLAVLLTFFIVMPVLAFMYYDMYYATQAAVQEVKKMRELRKEIQIERMYGK*
Ga0129333_1000005271	F023296	N/A	MAKYSMKVKGKEVGPATTYAAPHTMEGKSTEVQTYLGYKTGAQCMTEMNMSTGGISKGNYAPINPYGVGEMRGYGAATKGRKISGKMG*
Ga0129333_100000528	F004788	AGG	MDALELLVQQTDEKITQLKEHLAAGRATSFEEYKSVCGEIRGLLIARGYTLDLKKNLEDSDD*
Ga0129333_1000005281	F064661	GGA	MADIELTERERAIAKEAAKIAIEEMSSEFYKKVGKTVVEKFLIGVGLLAVGFFAGKGWVIKV*
Ga0129333_1000005284	F001530	N/A	MQITKEFLESEIRDLEQEANKAQTFLIQAQATITAYQMLINRLDAPEETENLNGDAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10000052

Overview

Ecosystem & Geography

Associated Families

Sequences