Basic Information | |
---|---|
Taxon OID | 3300010343 Open in IMG/M |
Scaffold ID | Ga0074044_10000113 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 80310 |
Total Scaffold Genes | 73 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (63.01%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000169 | Metagenome / Metatranscriptome | 1788 | Y |
F018213 | Metagenome / Metatranscriptome | 236 | Y |
F084518 | Metagenome / Metatranscriptome | 112 | Y |
F085956 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0074044_1000011322 | F085956 | GGA | MTLEEAAPPPLEFAPFYYIRMAFSIVRWDDMAVRRASRDPNALVYGAALSAASAAIIFLVTALPGMLTREGKTLETIFWGLLLGLVFFWTYMGIIAVIQIALCHAIAKVFLGTTGTLAGVMRPLFLGWFVNALILIPVVGIYAAGIAWTAVLTLVFEEVDGIERMQAFLISAGINAVFLVLLLLTPH* |
Ga0074044_1000011334 | F018213 | GAGG | MIAMLHFATLVITTLFAAAAAVAFNLMLLRAMFVFMRPATARRVAAPTNLVRGTAQLARAYASHR* |
Ga0074044_1000011336 | F000169 | AGGAGG | MAKKNKFNQVAAKIGGALGKADRKAHQVVRAGTLAKKELHDISKQVDALKRQLAKTTRRLKSALS* |
Ga0074044_1000011346 | F084518 | GGAG | MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDTPESTSSAPSSTT* |
⦗Top⦘ |