Metagenome / Metatranscriptome Family F084518

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084518
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	79 residues
Representative Sequence	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS
Number of Associated Samples	81
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.57 %
% of genes near scaffold ends (potentially truncated)	19.64 %
% of genes from short scaffolds (< 2000 bps)	66.07 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.536 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.250 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.357 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.43% β-sheet: 26.17% Coil/Unstructured: 51.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07238	PilZ	15.18
PF00067	p450	3.57
PF07617	DUF1579	2.68
PF04368	DUF507	1.79
PF01887	SAM_HAT_N	1.79
PF08241	Methyltransf_11	1.79
PF01933	CofD	0.89
PF13411	MerR_1	0.89
PF00313	CSD	0.89
PF00498	FHA	0.89
PF08206	OB_RNB	0.89
PF00069	Pkinase	0.89
PF02686	Glu-tRNAGln	0.89
PF02518	HATPase_c	0.89
PF07282	OrfB_Zn_ribbon	0.89
PF08786	DcrB	0.89
PF00083	Sugar_tr	0.89
PF08447	PAS_3	0.89
PF12867	DinB_2	0.89
PF01425	Amidase	0.89
PF05947	T6SS_TssF	0.89
PF11154	DUF2934	0.89
PF01406	tRNA-synt_1e	0.89
PF08818	DUF1801	0.89
PF07978	NIPSNAP	0.89
PF01229	Glyco_hydro_39	0.89
PF00805	Pentapeptide	0.89
PF13510	Fer2_4	0.89
PF13545	HTH_Crp_2	0.89
PF12651	RHH_3	0.89
PF00583	Acetyltransf_1	0.89
PF13426	PAS_9	0.89
PF00196	GerE	0.89
PF01597	GCV_H	0.89
PF13470	PIN_3	0.89
PF04255	DUF433	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG2124	Cytochrome P450	Defense mechanisms [V]	3.57
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	1.79
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.89
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.89
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG5435	Uncharacterized conserved protein	Function unknown [S]	0.89
COG4776	Exoribonuclease II	Transcription [K]	0.89
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.89
COG3664	Beta-xylosidase	Carbohydrate transport and metabolism [G]	0.89
COG3519	Type VI protein secretion system component VasA	Intracellular trafficking, secretion, and vesicular transport [U]	0.89
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.89
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG1278	Cold shock protein, CspA family	Transcription [K]	0.89
COG1158	Transcription termination factor Rho	Transcription [K]	0.89
COG0721	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	Translation, ribosomal structure and biogenesis [J]	0.89
COG0557	Exoribonuclease R	Transcription [K]	0.89
COG0509	Glycine cleavage system protein H (lipoate-binding)	Amino acid transport and metabolism [E]	0.89
COG0391	Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family	Carbohydrate transport and metabolism [G]	0.89
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.54 %
Unclassified	root	N/A	4.46 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	78.57 %
Unclassified	root	N/A	4.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.46 %
Unclassified	root	N/A	4.46 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.46 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.46 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Alloacidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium	0.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	0.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001137\|JGI12637J13337_1000084	All Organisms → cellular organisms → Bacteria → Acidobacteria	4772	Open in IMG/M
3300003368\|JGI26340J50214_10086770	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300003505\|JGIcombinedJ51221_10032712	All Organisms → cellular organisms → Bacteria → Acidobacteria	1904	Open in IMG/M
3300004080\|Ga0062385_10089805	All Organisms → cellular organisms → Bacteria → Acidobacteria	1458	Open in IMG/M
3300004080\|Ga0062385_10107060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1366	Open in IMG/M
3300004082\|Ga0062384_100035828	All Organisms → cellular organisms → Bacteria → Acidobacteria	2287	Open in IMG/M
3300004082\|Ga0062384_101076751	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300004082\|Ga0062384_101496592	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300004091\|Ga0062387_100303808	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300004091\|Ga0062387_100441223	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300004091\|Ga0062387_100634019	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300004120\|Ga0058901_1381140	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300005591\|Ga0070761_10052241	All Organisms → cellular organisms → Bacteria → Acidobacteria	2301	Open in IMG/M
3300005602\|Ga0070762_10654873	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300005712\|Ga0070764_10060192	All Organisms → cellular organisms → Bacteria → Acidobacteria	1964	Open in IMG/M
3300005712\|Ga0070764_10183769	All Organisms → cellular organisms → Bacteria → Acidobacteria	1165	Open in IMG/M
3300005993\|Ga0080027_10445098	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300006050\|Ga0075028_100098218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1490	Open in IMG/M
3300006052\|Ga0075029_101132431	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300006176\|Ga0070765_100012103	All Organisms → cellular organisms → Bacteria → Proteobacteria	6101	Open in IMG/M
3300009521\|Ga0116222_1377189	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300009521\|Ga0116222_1473281	Not Available	547	Open in IMG/M
3300009523\|Ga0116221_1440477	Not Available	568	Open in IMG/M
3300010343\|Ga0074044_10000113	All Organisms → cellular organisms → Bacteria	80310	Open in IMG/M
3300010343\|Ga0074044_10880367	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300011120\|Ga0150983_10721273	All Organisms → cellular organisms → Bacteria → Acidobacteria	2463	Open in IMG/M
3300011120\|Ga0150983_13101723	All Organisms → cellular organisms → Bacteria → Acidobacteria	980	Open in IMG/M
3300011120\|Ga0150983_14215014	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300012285\|Ga0137370_10414335	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300014162\|Ga0181538_10145524	All Organisms → cellular organisms → Bacteria → Acidobacteria	1363	Open in IMG/M
3300014164\|Ga0181532_10013493	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6212	Open in IMG/M
3300014164\|Ga0181532_10347452	Not Available	832	Open in IMG/M
3300014165\|Ga0181523_10122715	All Organisms → cellular organisms → Bacteria → Acidobacteria	1546	Open in IMG/M
3300014168\|Ga0181534_10035800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2461	Open in IMG/M
3300014200\|Ga0181526_10007478	All Organisms → cellular organisms → Bacteria → Acidobacteria	7845	Open in IMG/M
3300014495\|Ga0182015_10017150	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6079	Open in IMG/M
3300016702\|Ga0181511_1315529	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300016750\|Ga0181505_10419495	All Organisms → cellular organisms → Bacteria	2568	Open in IMG/M
3300017822\|Ga0187802_10228908	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300017930\|Ga0187825_10183369	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300017943\|Ga0187819_10506266	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300020579\|Ga0210407_10060951	All Organisms → cellular organisms → Bacteria → Acidobacteria	2825	Open in IMG/M
3300020579\|Ga0210407_10068125	All Organisms → cellular organisms → Bacteria → Acidobacteria	2669	Open in IMG/M
3300020580\|Ga0210403_10036286	All Organisms → cellular organisms → Bacteria → Acidobacteria	3942	Open in IMG/M
3300020580\|Ga0210403_10720070	All Organisms → cellular organisms → Bacteria → Acidobacteria	798	Open in IMG/M
3300020581\|Ga0210399_11145053	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300020582\|Ga0210395_10000018	All Organisms → cellular organisms → Bacteria	250088	Open in IMG/M
3300020582\|Ga0210395_10088777	All Organisms → cellular organisms → Bacteria	2282	Open in IMG/M
3300020582\|Ga0210395_10105215	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300020582\|Ga0210395_10134392	All Organisms → cellular organisms → Bacteria → Acidobacteria	1841	Open in IMG/M
3300020582\|Ga0210395_10279120	All Organisms → cellular organisms → Bacteria → Acidobacteria	1256	Open in IMG/M
3300020583\|Ga0210401_10078876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	3099	Open in IMG/M
3300020583\|Ga0210401_11448863	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300021171\|Ga0210405_11281899	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300021180\|Ga0210396_10614060	All Organisms → cellular organisms → Bacteria → Acidobacteria	945	Open in IMG/M
3300021180\|Ga0210396_10750736	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300021181\|Ga0210388_10000305	All Organisms → cellular organisms → Bacteria	42656	Open in IMG/M
3300021401\|Ga0210393_10000103	All Organisms → cellular organisms → Bacteria	93137	Open in IMG/M
3300021402\|Ga0210385_10116492	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300021402\|Ga0210385_11407447	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300021407\|Ga0210383_10551907	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300021420\|Ga0210394_10000647	All Organisms → cellular organisms → Bacteria	68353	Open in IMG/M
3300021432\|Ga0210384_10989942	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300021433\|Ga0210391_10006042	All Organisms → cellular organisms → Bacteria	9959	Open in IMG/M
3300021433\|Ga0210391_10058006	All Organisms → cellular organisms → Bacteria → Acidobacteria	3074	Open in IMG/M
3300021433\|Ga0210391_10687789	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300021477\|Ga0210398_10010379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	8277	Open in IMG/M
3300021477\|Ga0210398_10073339	All Organisms → cellular organisms → Bacteria → Acidobacteria	2783	Open in IMG/M
3300021477\|Ga0210398_10314729	All Organisms → cellular organisms → Bacteria → Acidobacteria	1277	Open in IMG/M
3300021478\|Ga0210402_10254613	All Organisms → cellular organisms → Bacteria → Acidobacteria	1621	Open in IMG/M
3300021478\|Ga0210402_11083810	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300021559\|Ga0210409_10048821	All Organisms → cellular organisms → Bacteria → Acidobacteria	3987	Open in IMG/M
3300022532\|Ga0242655_10051923	All Organisms → cellular organisms → Bacteria → Acidobacteria	1013	Open in IMG/M
3300022715\|Ga0242678_1009376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300022873\|Ga0224550_1001207	All Organisms → cellular organisms → Bacteria	4147	Open in IMG/M
3300024227\|Ga0228598_1022573	All Organisms → cellular organisms → Bacteria → Acidobacteria	1238	Open in IMG/M
3300024271\|Ga0224564_1117753	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300025474\|Ga0208479_1044956	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300025482\|Ga0208715_1088354	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300026467\|Ga0257154_1061219	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300026557\|Ga0179587_10286788	All Organisms → cellular organisms → Bacteria → Acidobacteria	1059	Open in IMG/M
3300027575\|Ga0209525_1083642	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300027660\|Ga0209736_1000029	All Organisms → cellular organisms → Bacteria	55547	Open in IMG/M
3300027701\|Ga0209447_10017699	All Organisms → cellular organisms → Bacteria → Acidobacteria	2015	Open in IMG/M
3300027737\|Ga0209038_10135432	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300027768\|Ga0209772_10071657	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300027783\|Ga0209448_10027653	All Organisms → cellular organisms → Bacteria → Acidobacteria	1886	Open in IMG/M
3300027795\|Ga0209139_10005257	All Organisms → cellular organisms → Bacteria	4903	Open in IMG/M
3300027812\|Ga0209656_10044404	All Organisms → cellular organisms → Bacteria → Acidobacteria	2551	Open in IMG/M
3300027829\|Ga0209773_10021952	All Organisms → cellular organisms → Bacteria → Acidobacteria	2508	Open in IMG/M
3300027855\|Ga0209693_10034378	All Organisms → cellular organisms → Bacteria → Acidobacteria	2479	Open in IMG/M
3300027879\|Ga0209169_10101633	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300027879\|Ga0209169_10179703	All Organisms → cellular organisms → Bacteria → Acidobacteria	1104	Open in IMG/M
3300027894\|Ga0209068_10657625	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300028016\|Ga0265354_1000748	All Organisms → cellular organisms → Bacteria	5309	Open in IMG/M
3300028016\|Ga0265354_1026555	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300028047\|Ga0209526_10289232	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300028800\|Ga0265338_10613633	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300028906\|Ga0308309_10018532	All Organisms → cellular organisms → Bacteria → Acidobacteria	4549	Open in IMG/M
3300028906\|Ga0308309_11053771	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300029636\|Ga0222749_10207108	All Organisms → cellular organisms → Bacteria → Acidobacteria	983	Open in IMG/M
3300031057\|Ga0170834_112240221	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300031231\|Ga0170824_112494234	Not Available	1952	Open in IMG/M
3300031474\|Ga0170818_106831157	Not Available	685	Open in IMG/M
3300031708\|Ga0310686_114046830	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300031708\|Ga0310686_118949875	All Organisms → cellular organisms → Bacteria → Acidobacteria	1033	Open in IMG/M
3300032160\|Ga0311301_10179197	All Organisms → cellular organisms → Bacteria → Acidobacteria	3710	Open in IMG/M
3300032160\|Ga0311301_10234182	All Organisms → cellular organisms → Bacteria → Acidobacteria	3064	Open in IMG/M
3300032515\|Ga0348332_11313278	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300032515\|Ga0348332_13586272	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300032770\|Ga0335085_10087930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4056	Open in IMG/M
3300032954\|Ga0335083_10768994	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Host-Associated	Host-Associated	3.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.64%
Aquatic	Environmental → Aquatic	26.79%
Plants	Host-Associated → Plants	3.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.96%
Freshwater	Environmental → Aquatic → Freshwater	24.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Sediment	Environmental → Aquatic → Sediment	2.68%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.79%
Peat	Environmental → Terrestrial → Peat	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.11%
Loam	Environmental → Terrestrial → Soil → Loam	16.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.25%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.79%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12637J13337_10000844	3300001137	Forest Soil	MNTYSIKLRYTDRSKGPEGTTLKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLEIEAARVLTATDTPEPPEAK*
JGI26340J50214_100867701	3300003368	Bog Forest Soil	LAHTLNLGQSRTMNTYSVKIRYEDRTKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRIVTEKSETAEAGQ*
JGIcombinedJ51221_100327123	3300003505	Forest Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS*
Ga0062385_100898051	3300004080	Bog Forest Soil	MNSYNVKLSYQDREKGTEEQTVKVDASTIAGAIAKAAREFVKGLDRKQRFDANKGLQIEASRAASGETEAPENAKGATA*
Ga0062385_101070601	3300004080	Bog Forest Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPEWTASAPSSTTND*
Ga0062384_1000358284	3300004082	Bog Forest Soil	TYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPESAPSSTTDE*
Ga0062384_1010767511	3300004082	Bog Forest Soil	SRSMNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTSDKTDAPESAGSAPSSTTDD*
Ga0062384_1014965921	3300004082	Bog Forest Soil	MNTYSVKIRYEDRAKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTDKSDTPEAGQ*
Ga0062387_1003038083	3300004091	Bog Forest Soil	MNTYSVKVRYEDRKSGSEGTTVKVDASSIAGAIAKASREFVKGLDRKQRFDANKGLTVEAVRVVTDKADDAKAEASTTA*
Ga0062387_1004412231	3300004091	Bog Forest Soil	MNTYSVKIRYEDRTKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSET
Ga0062387_1006340192	3300004091	Bog Forest Soil	MNSYNVKLSYQDREKGTEEQTVKVDATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIEASRAASGETEAPENAKG
Ga0058901_13811402	3300004120	Forest Soil	IRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS*
Ga0070761_100522412	3300005591	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDSPESTPSAPSSTT*
Ga0070762_106548731	3300005602	Soil	MNTYTIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDTAESTPSSTTNG*
Ga0070764_100601921	3300005712	Soil	MNTYSVKIRYEDRTKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAETGQ*
Ga0070764_101837693	3300005712	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKPDATESTTSAPGSTP*
Ga0080027_104450981	3300005993	Prmafrost Soil	VNTYNVKLRYEDRAKGSEGTTVKIDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAVRVNTDKDAPETPAKAEEASA*
Ga0075028_1000982182	3300006050	Watersheds	MNTYSIKLRYEDRSKGSEGKTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARVLSEGDKTETAQAAGANES*
Ga0075029_1011324312	3300006052	Watersheds	MNTYNVKIRYEDRAKGSEGTTVKVDASTIAGAIAKAAREFVKGLDRKQRFDANKGLTLEAVRVTIDKADATDEPNASSTSA*
Ga0070765_1000121035	3300006176	Soil	MNTYSVKIRYEDRTKGSEGTTAKVEASSIAGAIAKASREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAETGQ*
Ga0116222_13771891	3300009521	Peatlands Soil	MGDTMNIYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIKAARLTTGETEATETVNSKDA*
Ga0116222_14732811	3300009521	Peatlands Soil	MNSYRVKLIYQDRDKGTAGKTVKVDATTIARGIAKATREFINGLDRKQRHDANKGLQIEAERVATAETEAPESAKRTTA*
Ga0116221_14404771	3300009523	Peatlands Soil	DRDKGTAGKTVKVDATTIARGIAKATREFINGLDRKQRHDANKGLQIEAERVATAETEAPESAKRTTA*
Ga0074044_1000011346	3300010343	Bog Forest Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDTPESTSSAPSSTT*
Ga0074044_108803672	3300010343	Bog Forest Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTSDNTDAPESAGSAPSSTTDD*
Ga0150983_107212731	3300011120	Forest Soil	IRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDAPESTPSAPSSTTYD*
Ga0150983_131017232	3300011120	Forest Soil	MNTYSVKIRYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKGLDRKQRFDANKGLQLEVVRVTTDKADSPESIPSAPSSTTYD*
Ga0150983_142150141	3300011120	Forest Soil	MNTYSIKLRYTDRSKGPEGTTLKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLEIEAARVLTATDTSEAPAAK*
Ga0137370_104143352	3300012285	Vadose Zone Soil	MNTYNVKLRYEDRKTGTEGRTIKVDASSIAGAIGKAAREFVAGLDRKQRFDANKGLVAEAIRVNTNKSEPPEIAAEASA*
Ga0181538_101455242	3300014162	Bog	MGDTMNTYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIKAARLTTGETEATETVNSTDA*
Ga0181532_100134933	3300014164	Bog	MMNSYSVKVSYQDREKGPEVTTIKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARLTSAEAGGQESAESATA*
Ga0181532_103474521	3300014164	Bog	MGDTMNTYNVKLSYEDREKGDEGTTVKVEATTIARAIAKAAREFVKSLDGKQRFDANKGLQIKAARLTTGEPEATETANSKSA*
Ga0181523_101227152	3300014165	Bog	MGDMMNTYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIKAARLTAGVTEATETVNSKDA*
Ga0181534_100358002	3300014168	Bog	MNTYSVKVRYEDRSKGSEGTTVKVDASSIAGAIAKAAREYVKGLDRKQRFDANKGLTVEAVRVNTDKSETAEAPKTE*
Ga0181526_100074783	3300014200	Bog	MGDTMNTYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDGKQRFDANKGLQIKAARLTTGEPEATETANSKSA*
Ga0182015_100171503	3300014495	Palsa	VKLRYEDRAKGSEGTTVKIDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAVRVNTDKADAPETTAKAEEASA*
Ga0181511_13155291	3300016702	Peatland	MGDMMNTYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIKAARLTTGEPEATETANSKSA
Ga0181505_104194951	3300016750	Peatland	MNSYSVKVSYQDREKGPEVTTIKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARLTSAEAGGQESAESATA
Ga0187802_102289082	3300017822	Freshwater Sediment	MNSYSVKISYEDREKGREETTAKVDATTIAGAIAKASREFIKGLDRKQRFDANKGLQIEAARVTTAEPSFNVRN
Ga0187825_101833693	3300017930	Freshwater Sediment	MNSYSVKISYEDREKGREETTAKVDATTIAGAIAKASREFIKGLDRKQRFDANKGLQIEAARVTTAEADATESAKGTTA
Ga0187819_105062662	3300017943	Freshwater Sediment	MNSYSVKISYEDREKGRAETTAKVDATTIAGAIAKASREFIKGLDRKQKFDANKGLQIEAARVTTAEEDATESAKGTTA
Ga0210407_100609513	3300020579	Soil	MNTYSIKLRYTDRSKGPEGTTLKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLEIEAARVLTATDTSEAPAAK
Ga0210407_100681252	3300020579	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS
Ga0210403_100362864	3300020580	Soil	MNTYSVKIRYEDRSKGTEGSTVKVDASSIAGAIAKAAREFVKALDRKQRFDANKGLQVEAVRVSSDKTDAPESGASATSSGTYD
Ga0210403_107200702	3300020580	Soil	MNTYSVKIRYEDRSKGSEGTTVKVDASSISGAIAKASREFVKGLDRKQRFDANKGLTVEAIRVTTDKADDSPEKVTGTGA
Ga0210399_111450531	3300020581	Soil	MNTYSVKIRYEDRSKGTEGATVKIDASSIAGAIAKAAREFVKALDRKQRFDANKGLQVEAVRVSSDKTDAPESGASATSSGTYD
Ga0210395_10000018198	3300020582	Soil	MNTYSVKIRYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKSLDRKQRFDANKGLQLEVVRVTTDKADSPESISSAPSSTTYD
Ga0210395_100887772	3300020582	Soil	MNTYSVKLRYEDREKGSDEKTVNVDATTIAGAIAKAAREFIKGLDRKQRFDANKGLHIEAARAADKEGEAPESAKGTTA
Ga0210395_101052153	3300020582	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDTPENAPSSTTDS
Ga0210395_101343924	3300020582	Soil	MNTYSVKIRYEDRAKGSEGTTAKVEASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAEAGQ
Ga0210395_102791201	3300020582	Soil	MNTYSVKIRYEDRSKGTEGATVKVDASSIAGAIAKAAREFVKALDRKQRFDANKGLQVEAVRVSSDKTDAPESGASATSSGTYD
Ga0210401_100788765	3300020583	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATIIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDSPGSTPSAPSATT
Ga0210401_114488631	3300020583	Soil	RKTMNTYSVKLRYEDREKGSDEKTVNVDATTIAGAIAKAAREFIKGLDRKQRFDANKGLHIEAARAADKEGEAPESAKGTTA
Ga0210405_112818991	3300021171	Soil	SVKLRYEDREKGSDEKTVNVDATTIAGAIAKAAREFIKGLDRKQRFDANKGLHIEAARAADKEGEAPESAKGTTA
Ga0210396_106140602	3300021180	Soil	MNTYSVKIRYEDQNKGTEGTTVKIDATAIAGAIAKAAREFVKGLDRKQRFDANKGLQLEVVRVTTDKADSPESISRAPSSTTYD
Ga0210396_107507361	3300021180	Soil	YEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTSDKTGAPESTPSAPSSTTDD
Ga0210388_1000030511	3300021181	Soil	MNTYTIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDTAESTPSSTTNG
Ga0210393_1000010343	3300021401	Soil	MNTYSVKIRYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKGLDRKQRFDANKGLQLEVVRVTTDKADSPESISSAPSSTTYD
Ga0210385_101164922	3300021402	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDTAESTPSSTTNG
Ga0210385_114074471	3300021402	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPESAASAPSSTTDG
Ga0210383_105519072	3300021407	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATIIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS
Ga0210394_1000064711	3300021420	Soil	MNSYSVKISYEDREKGRAETTAKVDATTIAGAIAKASRDFIKGLDRKQRFDANKGLQIEAARVTTAEADATERAKGTTA
Ga0210384_109899422	3300021432	Soil	MNSYSIKLSYTDRSKGSEGTTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARLLTDSDKTEVLANGKSDV
Ga0210391_100060426	3300021433	Soil	MNTYTIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDAPESTPSSTTDE
Ga0210391_100580064	3300021433	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPESTPSSTTDS
Ga0210391_106877892	3300021433	Soil	MNTYTVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTSDKTGAPESTPSAPSSTTDD
Ga0210398_100103797	3300021477	Soil	MNTYSVKIRYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKGLDRKQRFDANKGLQLEVVRVTTDKADSPESISRAPSSTTYD
Ga0210398_100733392	3300021477	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKASREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDTPENAPSSTTDS
Ga0210398_103147293	3300021477	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAP
Ga0210402_102546132	3300021478	Soil	MNTYSIKLRYEDRSKGAEGTTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARVLSESDKTETAQAAGATE
Ga0210402_110838101	3300021478	Soil	MNTYSVKIRYEDRTKGSEGTTAKVEASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETPETGQ
Ga0210409_100488211	3300021559	Soil	QSRSMNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS
Ga0242655_100519232	3300022532	Soil	VLAHKLNLGQSRTMNTYSVKIRYEDRAKGSEGTTAKVEASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAEAGQ
Ga0242678_10093763	3300022715	Soil	RYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKSLDRKQRFDANKGLQLEVVRVTTDKADSPESISRAPSSTTYD
Ga0224550_10012073	3300022873	Soil	MNQYSVTLRYEDRETGSEAKTVKMDASSIAGAVGKAAREFVGALDRKQRFDANKGLRVEAVRVLTDREDVPEASAEASA
Ga0228598_10225732	3300024227	Rhizosphere	MNTYSVKIRYEDRSKGTEETTVKVDASSIAGGIAKAAREFVKGLDRKQRFDANKGLQVEAVRVLTDKTETPEDAARAAT
Ga0224564_11177531	3300024271	Soil	TYSVKIRYEDRSKGTEETTVKVDASSIAGGIAKAAREFVKGLDRKQRFDANKGLQVEAVRVLTDKTETPEDAARAAT
Ga0208479_10449562	3300025474	Arctic Peat Soil	MNTYSIEIRFEDRGKGTEVKAVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLTVEAMRVNTDKAEATA
Ga0208715_10883542	3300025482	Arctic Peat Soil	MNTYSVKVRYEDRKSGSEGTTVKVDASSIAGAIAKASREFVKGLDRKQRFDANKGLTVEAVRVVTDKADDAKAEASTTA
Ga0257154_10612191	3300026467	Soil	RSKGTEGTAVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAVRVTTDKEGAPETPENAAGANA
Ga0179587_102867882	3300026557	Vadose Zone Soil	MNTYSIKLRYEDRSKGSEGTTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARVLSESDKPEAAQAAGANE
Ga0209525_10836422	3300027575	Forest Soil	MNTYNVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDVPESSGSAPGATTDN
Ga0209736_100002921	3300027660	Forest Soil	MNTYSIKLRYTDRSKGPEGTTLKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLEIEAARVLTATDTPEPPEAK
Ga0209447_100176993	3300027701	Bog Forest Soil	MNSYNVKLSYQDREKGTEEQTVKVDASTIAGAIAKAAREFVKGLDRKQRFDANKGLQIEASRAASGETEAPENAKGATA
Ga0209038_101354322	3300027737	Bog Forest Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTSDKTDAPESAGSAPSSTTDD
Ga0209772_100716572	3300027768	Bog Forest Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPEGTASAPSSTT
Ga0209448_100276531	3300027783	Bog Forest Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPESAPSSTTDE
Ga0209139_100052575	3300027795	Bog Forest Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDAPESTGSAPSSTTDD
Ga0209656_100444043	3300027812	Bog Forest Soil	MNTYSVKIRYEDRTKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRIVTEKSETAEAGQ
Ga0209773_100219524	3300027829	Bog Forest Soil	MNSYNVKLSYQDREKGTEEQTVKVDATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIEASRAASGETEAPENAKGATA
Ga0209693_100343783	3300027855	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDSPESTPSAPSSTT
Ga0209169_101016331	3300027879	Soil	MNTYSVKIRYEDRTKGSEGTTAKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAETGQ
Ga0209169_101797032	3300027879	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDAPESTPSSTTDE
Ga0209068_106576252	3300027894	Watersheds	MNTYSIKLRYEDRSKGSEGKTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAARVLSEGDKTETAQAAGANES
Ga0265354_10007484	3300028016	Rhizosphere	MNTYNVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQMQAVRVTTDKTDVPESTGSAPSATTDN
Ga0265354_10265551	3300028016	Rhizosphere	MNTYNVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQMEAVRVATDKTDVPESTGSAPSATTDN
Ga0209526_102892322	3300028047	Forest Soil	MNTYNVKLRYEDRSKGTEGTAVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLQIEAVRVTTDKEGAPETPENAAGANA
Ga0265338_106136331	3300028800	Rhizosphere	MNTYSVKVRYEDRSKGSEGTTVKVDASSIAGAIAKAAREFVKGLDRKQRFDANKGLTVEAVRVNTEKSESPEAPTTE
Ga0308309_100185325	3300028906	Soil	MNTYSVKIRYEDRTKGSEGTTAKVEASSIAGAIAKASREFVKGLDRKQRFDANKGLQVEAVRVVTEKSETAETGQ
Ga0308309_110537711	3300028906	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTD
Ga0222749_102071081	3300029636	Soil	MNTYSIKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDAPENAPSAPS
Ga0170834_1122402211	3300031057	Forest Soil	NSYSVKISYEDREKGREETTAKVDATTIAGAIAKASREFIKGLDRKQRFDANKGLQIEAARVTTTEADTTENAKGTTA
Ga0170824_1124942342	3300031231	Forest Soil	MNSYSVKISYEDREKGREETTAKVDATTIAGAIAKASREFIKGLDLKQRFDANKGLQIEAARVTTTEADTTENAKGTTA
Ga0170818_1068311572	3300031474	Forest Soil	MNSYSVKISYEDREKGKEETTAKVDATTIAGAIAKASREFIKGLDLKQRFDANKGLQIEAARVTTTEADTTENAKGTTA
Ga0310686_1140468301	3300031708	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDSPESTPSAPSSTT
Ga0310686_1189498752	3300031708	Soil	MNTYSVKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQLEAVRVTTDKTDAPDSTPSAPSST
Ga0311301_101791973	3300032160	Peatlands Soil	MNIYNVKLSYEDREKGDEGTTVKVEATTIAGAIAKAAREFVKSLDRKQRFDANKGLQIKAARLTTGETEATETVNSKDA
Ga0311301_102341826	3300032160	Peatlands Soil	MNSYRVKLIYQDRDKGTAGKTVKVDATTIARGIAKATREFINGLDRKQRHDANKGLQIEAERVATAETEAPESAKRTTA
Ga0348332_113132782	3300032515	Plant Litter	EDRSKGTEGATVKVDASSIAGAIAKAAREFVKALDRKQRFDANKGLQVEAVRVSSDKTDAPESGASATSSGTYD
Ga0348332_135862722	3300032515	Plant Litter	VKIRYEDRSKGTEGTTVKVDATTIAGAIAKAAREFVKGLDRKQRFDANKGLQVEAVRVTTDKTDSPESTPSAPSSTT
Ga0335085_100879303	3300032770	Soil	MNSYSVKIRYEDRQKGSEATTVKVDATTIAGAIAKAAREFIKGLDRKQRFDANKGLQIEAARVASTDTEAPESAEGATA
Ga0335083_107689942	3300032954	Soil	MNSYDVKIQYEDREKGTEGKTIKVDASSIAGAIAKAAREFVKGLDRKQKFDANKGLNITASRAASSDSTTTESSKGAAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084518

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences