NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116211_1210266

Scaffold Ga0116211_1210266


Overview

Basic Information
Taxon OID3300010313 Open in IMG/M
Scaffold IDGa0116211_1210266 Open in IMG/M
Source Dataset NameHot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameSouth Africa: Limpopo
CoordinatesLat. (o)-22.5304Long. (o)30.6814Alt. (m)Depth (m)1.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012911Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0116211_12102661F012911AGGGGGMAEQHDSKFDEFLAIRKPGAHLEAEVVPDDFVMQLGVDLTNYHKFPRVDDNVTYPKANLDIRQELDRDSGAELPDYSGPYKADLRFTDFSKQALASKFLPWSEAYMQLCVDGWAREVAKRYGTETMAEIEWAAWVAQVVPEIERMKQEFLPAG

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