Scaffold Ga0129348

Basic Information
Taxon OID	3300010296 Open in IMG/M
Scaffold ID	Ga0129348_1022893 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010296 Open in IMG/M

Scaffold ID

Ga0129348_1022893 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2278
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2278

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.0306	Long. (^o)	-76.0464	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.0306

Long. (^o)

-76.0464

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F093735	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129348_10228931	F093735	N/A	TQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK*
Ga0129348_10228932	F038646	N/A	MTDDILDYARQLVANQPMKLRDHHKYDLEIPDDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKQVVAKAYADPSWVYKLNMDCVEEEDGSMTIHIEWDEKDPDLQYWTNLGAKGQEDFILTALRSACNSVLSDHGN*
Ga0129348_10228933	F002738	N/A	MAIDTYGLPFEQYEEFFDKNIRSAAKLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKGNNPEALKDSDLYNISPTREEIMEVVQSVNAKVEALTDHISNLSNLITVTTAGLEGIATTLDKPVD*
Ga0129348_10228935	F001018	N/A	MTTQITQAKLKELSIIKLYEHYRALEQSLPLLTPESQELAQAELETCANLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHEAQLKSLKGLLNYLRRVLPVDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCITEEVTTTKRVVLRSMSGDILDERIEPKTITKVLPNLDAIRSAYQEGQHLPDGVKVKQEYSVRSKRIFSEPRMELEASEYPAEFLREDSSAD*
Ga0129348_10228936	F025982	AGGA	MSCHEHAIKDFDLQLEMNGLQMDMLMEDGKVLDYHMSEYEDLEQRKLKLLVGKRFHQNARNAYWYWIQREKSGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129348_1022893

Overview

Ecosystem & Geography

Associated Families

Sequences