Scaffold Ga0134090_1013061

Overview

Basic Information

• Taxon OID: 3300010281
• Scaffold ID: Ga0134090_1013061
• Source Dataset Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2576
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location

• Location Name: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F020859	Metagenome / Metatranscriptome	221	Y
F048731	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134090_10130613	F014634	AGGA	MQERIKEIFDLERIRDFVEKNIHDSEWIEEECGEKRRILVIDTLFDGGYGAYIPGMVLEMFGQAEGYDLEDPYNLEKNETIYDALEDLENEINDCLNELIPSKGRYYVGYHEYDGSYCLFYEEYERGENAE*
Ga0134090_10130614	F048731	GGAGG	METIKRALEYALSINQNPIEIKKNMEDFFALSGYDRRYKFKWCALSGNHKYTFSGIFEYAGQKYYFSKMSGELELERI*
Ga0134090_10130615	F020859	GGAGG	MKKIIAKEVNPSHVDFSYYFDDDGLKSVGGENCAVYIVSGDRRWYNGFNMEEYKEIEEKAKAIIDGFRDVSDKWANGYATYKEVMEDNAIPYTSRRCHLLKEWAEHADPYDTSDIAEFLTIITGEEWAVKSFTGYSQGDYCEVVYCVNHYTPEHITEIGKFWLGCGTEFIIDGCSGYYVIDELRWEEGEKLRQYLADCYGCKPEELEIYLYDGEHVVTDYKKMD*