Basic Information | |
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Taxon OID | 3300010268 Open in IMG/M |
Scaffold ID | Ga0134097_1000366 Open in IMG/M |
Source Dataset Name | Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 8_30_10_142_A2 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 51347 |
Total Scaffold Genes | 69 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (75.36%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Dartmouth College, New Hampshire | |||||||
Coordinates | Lat. (o) | 43.726 | Long. (o) | -72.1429 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020859 | Metagenome / Metatranscriptome | 221 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0134097_100036613 | F020859 | AGGAGG | MKKIIAKEVPPSNVDFRYYFDDEGLKSVSGKNCAVFVVPADRRRYSGFNMEEYEEIERTADSLIETFEEVSSKNKYYPTYKEAMLSHNIDYTSRKCHLLKKWAEYANPYDTSDIAEFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHHSEERITEIGKFWLGCGTEFCIDDCYGYYVPDTIRWPEGETLRKYLADCYGCKPEELEIYLYDGEHIVTDYRLMD* |
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