NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129314_1004248

Scaffold Ga0129314_1004248


Overview

Basic Information
Taxon OID3300010266 Open in IMG/M
Scaffold IDGa0129314_1004248 Open in IMG/M
Source Dataset NameOrangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6149
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.78Long. (o)-88.79Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029589Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0129314_10042484F029589AGGAGMKEYEIVAKIYNACAGSGRPQTFFEEAALENPDDYVRSKHGKEFARFTKETLPTGQLLYRFDNGSVAYSYEFTEL*

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