Scaffold Ga0124941_1130088

Overview

Basic Information

• Taxon OID: 3300010250
• Scaffold ID: Ga0124941_1130088
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0124941_11300882	F002970	GGAG	MSYSAVTDIIEMLAGLTVQYNSVVVPVQRLAAQANWSDAAQLPVRIIPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGYVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLIRAPST*