Sample 3300010250

Basic Information
IMG/M Taxon OID	3300010250 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111632 \| Ga0124941
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	98976424
Sequencing Scaffolds	21
Novel Protein Genes	23
Associated Families	21

Dataset Contents

Total Genome Size

98976424

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → cellular organisms → Bacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F002970	Metagenome / Metatranscriptome	517	N
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F011940	Metagenome / Metatranscriptome	285	Y
F012577	Metagenome / Metatranscriptome	279	Y
F021779	Metagenome / Metatranscriptome	217	N
F032180	Metagenome / Metatranscriptome	180	Y
F035322	Metagenome / Metatranscriptome	172	Y
F050404	Metagenome / Metatranscriptome	145	Y
F056643	Metagenome / Metatranscriptome	137	N
F057401	Metagenome / Metatranscriptome	136	Y
F065815	Metagenome / Metatranscriptome	127	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F079345	Metagenome / Metatranscriptome	116	Y
F082732	Metagenome / Metatranscriptome	113	N
F085751	Metagenome / Metatranscriptome	111	N
F093913	Metagenome / Metatranscriptome	106	Y
F098323	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124941_1022744	Not Available	1101	Open in IMG/M
Ga0124941_1022910	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	539	Open in IMG/M
Ga0124941_1034359	Not Available	1131	Open in IMG/M
Ga0124941_1048170	Not Available	2647	Open in IMG/M
Ga0124941_1048890	Not Available	1330	Open in IMG/M
Ga0124941_1049288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	601	Open in IMG/M
Ga0124941_1052633	Not Available	1198	Open in IMG/M
Ga0124941_1054779	Not Available	929	Open in IMG/M
Ga0124941_1077738	Not Available	936	Open in IMG/M
Ga0124941_1088062	Not Available	1096	Open in IMG/M
Ga0124941_1105580	Not Available	737	Open in IMG/M
Ga0124941_1109697	Not Available	520	Open in IMG/M
Ga0124941_1111561	Not Available	588	Open in IMG/M
Ga0124941_1112002	Not Available	578	Open in IMG/M
Ga0124941_1112035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	636	Open in IMG/M
Ga0124941_1129744	Not Available	529	Open in IMG/M
Ga0124941_1130088	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
Ga0124941_1134219	Not Available	805	Open in IMG/M
Ga0124941_1141620	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
Ga0124941_1148580	Not Available	2379	Open in IMG/M
Ga0124941_1154426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	791	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124941_1022744	Ga0124941_10227442	F011940	LVGDLLDGLEALQRAVSPPAARICDLPAPVLADAPEQHGFRDVFPEFVSGLCVFFTVSAPVLDFVRFPVTLLVISFVFWTAWRVFRSLS*
Ga0124941_1022910	Ga0124941_10229103	F079345	LTSMLPLALGLELDGLSVLQRKLLLEVLQKRYPHYWSRFVSPRYGWQSRKETLEMFLQNHGTELLKEFAKAGLHGNGWKTARRSGVHAQG*
Ga0124941_1034359	Ga0124941_10343593	F007404	MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEALWEEKQK*
Ga0124941_1048170	Ga0124941_10481701	F065815	PNKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0124941_1048890	Ga0124941_10488901	F012577	DDGDERGRVTLPPALARSSVMTQIGDELAVYCTQLSKTIWRGQIERIEETTDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPPSAGYDSRPDLWEYEIVSVGGLAQMRIRTKKAGTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGDTSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTREGITVPNWAADVSDYAIVSGYFRNAKITSRTIS
Ga0124941_1049288	Ga0124941_10492881	F021779	VTSNQPLICIAKQIYDKDAAAINTGAGDPDAVSRQSLGYNGINLSDAKTEIFLPIAWRINAQSTCGFWRYTGLIVQNAGASNANVTVRAYNNAGALINTWNDPNPLGPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0124941_1052633	Ga0124941_10526332	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLVTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLTKQTIEALLQVVDRAAQFDRIPLLAVVLSDDVPARTASGAKVDREWVLIPLRELKRLMGKETSYE*
Ga0124941_1054779	Ga0124941_10547792	F008499	LQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*
Ga0124941_1077738	Ga0124941_10777381	F000642	GICGDARLALDVCVDGCCCGMSSAAGARSPGRAERAGSFGVQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0124941_1080593	Ga0124941_10805931	F050404	LFIGSDVTAQTTPDPTTQEIENFFDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSGVEKLCVNEQKQAFVFPKNTDYYNGLIYCLDHDKSKPEFL
Ga0124941_1088062	Ga0124941_10880622	F098323	MLKNKSWILLVIFALFGFITTSIPVWTQENTTTQFDNTILAKNQQPVVPIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSSWSDQEIVNKCNSTIPANNSSRKLVKLVPDNNGQLKEVLATRINVKEKLLGVARATEDNFYLTVANQLANPFS
Ga0124941_1105580	Ga0124941_11055802	F032180	MWWKIEDAPERELEQWATDVTRVERAAKRDVEARAAGAFVIYSLDDALHYAAGREAPAGAYVVERWVRGKRGWRLYE*
Ga0124941_1109697	Ga0124941_11096972	F035322	RVIDISKSPSRVFAQYRGYEIDHLTTTASIASLESRRQLAQRTGSVGEYNNQTIAETRRNEAAIAFERQIAPLSIDLDNTRYELMTASGVTIPNWAADVSDYAIVPGYFRNAQITSRTITRDRTTYTVSFDSDDFVTALRG*
Ga0124941_1111561	Ga0124941_11115611	F057401	VVRAYRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYALAKGWIVEGPVGYGRLGPEYEHPDTLIVDIGRNLQVRALVKPGETTVRYEHGYDGSRLRYAQASVAAGLVVGAEGYKAAPRYWARVARLLIVAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEVFQPTAP*
Ga0124941_1112002	Ga0124941_11120021	F057401	VVRAYRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAGGLVVGAEGYKPAPRYWARVARLLIVAEEPTDSQAEAIRAALRAMVGDDPGGLEEFDRYFAMTGAEILAGPEVFQPTVP*
Ga0124941_1112035	Ga0124941_11120352	F073601	PLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFGLLRFAWRCAIKIMACGSIIRTLPVEKRALAGMGVLLQQG*
Ga0124941_1129744	Ga0124941_11297442	F085751	MNELIAWIIAAAVILLLANTNVADGLFDALDLSDNLRRAAEWTRGVRGAPAAVSAASFFVLAYVFGALAYRYDLVPTWRFIQPVAQDVLSSGAEWLTLFAVFLTLLP
Ga0124941_1130088	Ga0124941_11300882	F002970	MSYSAVTDIIEMLAGLTVQYNSVVVPVQRLAAQANWSDAAQLPVRIIPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGYVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLIRAPST*
Ga0124941_1134219	Ga0124941_11342191	F005302	MAHFNVIQGLYAGDFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEITLTFLYNETTNSASNTIYDYFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGPGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGV
Ga0124941_1134219	Ga0124941_11342192	F056643	GGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124941_1141620	Ga0124941_11416202	F093913	MGANVTLVDIDSGDKFSVPAGALQKLFGVVPEQGEVWEFRASRLDEIADTFKKWQVVQGA
Ga0124941_1148580	Ga0124941_11485802	F073593	MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYT
Ga0124941_1154426	Ga0124941_11544262	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLIAANRGPLMLRTNAAELALPVLEQDQTPDVESSALID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010250: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences