NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136485_1008052

Scaffold Ga0136485_1008052


Overview

Basic Information
Taxon OID3300010243 Open in IMG/M
Scaffold IDGa0136485_1008052 Open in IMG/M
Source Dataset NameMarine sediment microbial community from clay-turbidite interface sediment within the South China Sea
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Microbial Communities From Interfaces Within Marine Sediments From The South China Sea

Source Dataset Sampling Location
Location NameSouth China Sea
CoordinatesLat. (o)12.91889Long. (o)115.04722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080857Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0136485_10080522F080857N/AMSGNERVRETFLAKVYKGWRVTIYEPVREHLGLEVGDRVRITIRKDESKG*

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