3300010243: Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea

Overview

Basic Information

• IMG/M Taxon OID: 3300010243
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121458 | Gp0154502 | Ga0136485
• Sample Name: Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea
• Sequencing Status: Permanent Draft
• Sequencing Center: Oregon State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64016930
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_9	1
Not Available	7
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Interfaces Within Marine Sediments From The South China Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Microbial Communities From Interfaces Within Marine Sediments From The South China Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: South China Sea
• Coordinates
  • Lat. (^o): 12.91889
  • Long. (^o): 115.04722
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014684	Metagenome / Metatranscriptome	261	Y
F038003	Metagenome / Metatranscriptome	167	Y
F058676	Metagenome	134	Y
F062423	Metagenome	130	Y
F071959	Metagenome / Metatranscriptome	121	Y
F073072	Metagenome	120	Y
F080857	Metagenome / Metatranscriptome	114	Y
F092941	Metagenome / Metatranscriptome	107	N
F102404	Metagenome	101	Y
F102405	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136485_1002582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_9	897
Ga0136485_1002942	Not Available	865
Ga0136485_1004624	Not Available	768
Ga0136485_1005961	All Organisms → cellular organisms → Archaea	720
Ga0136485_1007680	All Organisms → cellular organisms → Archaea	675
Ga0136485_1008052	Not Available	667
Ga0136485_1009528	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	639
Ga0136485_1009591	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	638
Ga0136485_1013888	Not Available	580
Ga0136485_1015858	Not Available	558
Ga0136485_1016901	Not Available	548
Ga0136485_1018995	Not Available	529
Ga0136485_1019998	All Organisms → cellular organisms → Archaea	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136485_1002582	Ga0136485_10025823	F092941	MLGEILLKMVSVLTPDDIKQMKAAGCGDEVKAILGELDKLAVSWHDGEYGLMSLVDVQIWANVRSSLDKLRAALAEG*
Ga0136485_1002942	Ga0136485_10029422	F062423	MRKIVIEELIRAGGGMIFWMAGLYGLDYIGVIAISAGQSLAISAGISTVMFLVLVVLRRRTGKEFMLKRVRYLLVLLLVFSIPVFIRRMLAGEVTRAVLFAVGVLFVCLLLFIVSKRPGMKW*
Ga0136485_1004624	Ga0136485_10046242	F073072	VGDLKKVMFIVAHLVPDPEAYEGKTNRDVENEILREMPVIPYVSRIEKVTVLDC*
Ga0136485_1005961	Ga0136485_10059613	F102404	MSRELRELLGPYELLELRDREHVVLRIVSHELGTMVIHPRWPGAPAEKEISVLSVHLAPGVKPYPPQYFDITSKTLIAQLHPFLLERGFERYEFVITKFGVPPRARFTLERRPR*
Ga0136485_1007680	Ga0136485_10076802	F102404	VSRELRELLGPYELLELRDREHAVLRMVSSELGTMVIHPRWPGAPKEKEISVLRVHLAPGVKPYPPQYYDITSKTLIAQLQPFLMERGFENYEFVVTKFGIPPRARFTLERRPR*
Ga0136485_1008052	Ga0136485_10080522	F080857	MSGNERVRETFLAKVYKGWRVTIYEPVREHLGLEVGDRVRITIRKDESKG*
Ga0136485_1009528	Ga0136485_10095281	F038003	VSPQYANSKQTDDASTLAKDLLGVTLVPETTVQSGPDAASSPPVDQEVPTDSHLVPFGLSLDPPSDFASMDALIEAGPNPLWYCMRSPWDRLTAVSTYGPLGSEEADEPDFCWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSLGDEDCGPSRECFHVDLGGPGEGNQLGTPENGDPPRPAPRVDILRELAVIPVPAGGHDPQLEQIREMQA
Ga0136485_1009591	Ga0136485_10095912	F014684	MTWHQYYFRIIGFALAGAGAGLILDELIHGPFTLTPANHEFWGLVALVAGCVLISKKPHGKILS*
Ga0136485_1013888	Ga0136485_10138881	F071959	SDKKRYRTTALAAGLERCGQKNIGNINADIPVLAGIPPADKEARVAAIKASIETGAWPRSIDQRELAPLTDFVAAAAKDFWVTIALAAVGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGPRLETAAFFSEPAVIDPQDLFAIQVLCNIIAGATPVHIDNFLFEI
Ga0136485_1015858	Ga0136485_10158581	F071959	AGLERCGLKSIGDINSDVPGLQAIPIGSKSARVAALQAYIEPGAWPSSIDQRELAPLTDFVAAAAQDFWGTVALAAVGTVYTCLGALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPMGTRLETVAFFSEPVVIDPQDLFAIQVLCNVIAGATPVNSDNFLVESSGGV
Ga0136485_1016901	Ga0136485_10169012	F102405	SAAFLLLYKRKEGSIMAQEVNLLDPLGIVKAVRGQVNQMAISAKLPPLPEMPTIKMSMAGLPLLNKFNQIPDRPGMSRGERAG*
Ga0136485_1018995	Ga0136485_10189952	F058676	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPSELVIRVLAEDKPSE*
Ga0136485_1019998	Ga0136485_10199982	F102404	VSRELRELLLPYALLELRDREHVILQIVSHELGTMVIHPRWPGAPAEKEISVLRVHLAAGVKPYPPQYYDITSKTLIAQLLPFLQERGFERWEFVITKFGVPPRARFTLERRPR*