Scaffold Ga0136485_1007680

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136485_1007680

Scaffold Ga0136485_1007680

Overview

Basic Information
Taxon OID	3300010243 Open in IMG/M
Scaffold ID	Ga0136485_1007680 Open in IMG/M
Source Dataset Name	Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	675
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Microbial Communities From Interfaces Within Marine Sediments From The South China Sea

Source Dataset Sampling Location
Location Name	South China Sea
Coordinates	Lat. (^o)	12.91889	Long. (^o)	115.04722	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102404	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136485_10076802	F102404	N/A	VSRELRELLGPYELLELRDREHAVLRMVSSELGTMVIHPRWPGAPKEKEISVLRVHLAPGVKPYPPQYYDITSKTLIAQLQPFLMERGFENYEFVVTKFGIPPRARFTLERRPR*

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