Scaffold Ga0136250_100001743

Overview

Basic Information

• Taxon OID: 3300010237
• Scaffold ID: Ga0136250_100001743
• Source Dataset Name: Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale Center for Genome Analysis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024691	Metagenome	204	Y
F041530	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136250_1000017432	F024691	GGAG	MRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIGLDKTLKLTDERGRKYDIAFIYEGELFLVEVKRCGKWQ*
Ga0136250_1000017433	F041530	GAGG	MAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVRQAYGKIYQKWTQLSEEEKAYWNELGKPHKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDTVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGSDFFSFFDDF