NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136250_100001743

Scaffold Ga0136250_100001743


Overview

Basic Information
Taxon OID3300010237 Open in IMG/M
Scaffold IDGa0136250_100001743 Open in IMG/M
Source Dataset NameTerrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024691Metagenome204Y
F041530Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0136250_1000017432F024691GGAGMRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIGLDKTLKLTDERGRKYDIAFIYEGELFLVEVKRCGKWQ*
Ga0136250_1000017433F041530GAGGMAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVRQAYGKIYQKWTQLSEEEKAYWNELGKPHKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDTVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGSDFFSFFDDF

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