3300010237: Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2

Overview

Basic Information

• IMG/M Taxon OID: 3300010237
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121435 | Gp0154128 | Ga0136250
• Sample Name: Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1260996402
• Sequencing Scaffolds: 6
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	3
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Terrestrial Oil Reservoir Microbial Communities From Alaska
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004971	Metagenome	416	Y
F024691	Metagenome	204	Y
F041530	Metagenome	159	N
F043719	Metagenome	155	N
F045470	Metagenome	152	N
F059535	Metagenome	133	N
F066220	Metagenome	127	N
F076711	Metagenome	117	Y
F077781	Metagenome / Metatranscriptome	117	N
F079441	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136250_100000730	All Organisms → Viruses → Predicted Viral	4242
Ga0136250_100001505	Not Available	2252
Ga0136250_100001743	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1992
Ga0136250_100002654	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1435
Ga0136250_100004520	Not Available	959
Ga0136250_100004559	Not Available	954

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136250_100000730	Ga0136250_1000007301	F059535	AEFDGFTIQYDEAIGWYDYVETGDTSKYGKDFGYYASLIVRVRNEDGVCRSLLTAIYGKENGKVDITDEGIEALYGIASFVITSIRVKGTAVKIPVKEEERVIVAPTKEIPELSAVVGLIGYIAKNYNMSVDEVIELVRKSFKRK*
Ga0136250_100000730	Ga0136250_1000007302	F066220	MGLFVNVRELSVRELMDLARSNEYSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY*
Ga0136250_100000730	Ga0136250_1000007306	F045470	MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKLDHAPEIYTDIPFGLVR*
Ga0136250_100000730	Ga0136250_1000007307	F043719	MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWIGGYEA*
Ga0136250_100000730	Ga0136250_1000007308	F079441	MRLESYELVEQLKTLNENIRTLNSILKDWANITNRLDEQIRLLETQRYSSKYWHFEPIEHYDLETLQPGEVVNLLSTTESGAFVLFCSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNVGDTEIQYNYIIFRYKYIGGD*
Ga0136250_100001505	Ga0136250_1000015055	F004971	MGEEMEIKVGNLSEFEEGWFEALRCLAIQKISEATGEPAKLATGFCNDDEALHLLTASGRVFHVCYSDPLCVFVVEEVRCPRCGQWVPANILEEHLEEHEEFCVWEEEVM*
Ga0136250_100001743	Ga0136250_1000017432	F024691	MRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIGLDKTLKLTDERGRKYDIAFIYEGELFLVEVKRCGKWQ*
Ga0136250_100001743	Ga0136250_1000017433	F041530	MAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVRQAYGKIYQKWTQLSEEEKAYWNELGKPHKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDTVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGSDFFSFFDDF
Ga0136250_100002654	Ga0136250_1000026542	F077781	PAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*
Ga0136250_100004520	Ga0136250_1000045201	F076711	MGVGWAICPVCGKKFEGSYFPDTGVNTAVHMVQRHMVLRHSKKITDSGIVVAKLPDDYIRASELKTFVAGGTGNTRLQGRAHIVCVCGRYFDITLEEHYDEGKKIEVVVREYDDVGRYKKISERRVVERVGHIDVSKFAELWERAWERIKEDIIREHLMEHGIHL*
Ga0136250_100004520	Ga0136250_1000045202	F004971	MEIKIENLDLFEDGWFEALKCLAIQKISEATGELCRLATGFCNDDEAFHLTAGGRVFHVCYSDPLLVFVVEEVRCPKCGQWVPGNVLEEHLEEHEVM*
Ga0136250_100004559	Ga0136250_1000045592	F076711	MMGIGWATCPVCGKRFEGSYFPDTGVNTAVHMVQRHTILRHGKKITDSGIVDAKLPDDFIRASELKTFVAGGTGNTRLQGRAYIICVCGRYFDITLTEIYDEGKKIEVVVREYDDVGRYKKISERRVVERVGHVDVSKFERLWEQAWERIKEDIIREHLEEHGIHL*