Scaffold Ga0136250

Basic Information
Taxon OID	3300010237 Open in IMG/M
Scaffold ID	Ga0136250_100000730 Open in IMG/M
Source Dataset Name	Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale Center for Genome Analysis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010237 Open in IMG/M

Scaffold ID

Ga0136250_100000730 Open in IMG/M

Source Dataset Name

Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale Center for Genome Analysis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4242
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4242

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Ecosystem

Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	70.4	Long. (^o)	-148.7	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Alaska, USA

Coordinates

Lat. (^o)

70.4

Long. (^o)

-148.7

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043719	Metagenome	155	N
F045470	Metagenome	152	N
F059535	Metagenome	133	N
F066220	Metagenome	127	N
F079441	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136250_1000007301	F059535	N/A	AEFDGFTIQYDEAIGWYDYVETGDTSKYGKDFGYYASLIVRVRNEDGVCRSLLTAIYGKENGKVDITDEGIEALYGIASFVITSIRVKGTAVKIPVKEEERVIVAPTKEIPELSAVVGLIGYIAKNYNMSVDEVIELVRKSFKRK*
Ga0136250_1000007302	F066220	AGGAG	MGLFVNVRELSVRELMDLARSNEYSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY*
Ga0136250_1000007306	F045470	GGAGG	MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKLDHAPEIYTDIPFGLVR*
Ga0136250_1000007307	F043719	GAGG	MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWIGGYEA*
Ga0136250_1000007308	F079441	GGA	MRLESYELVEQLKTLNENIRTLNSILKDWANITNRLDEQIRLLETQRYSSKYWHFEPIEHYDLETLQPGEVVNLLSTTESGAFVLFCSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNVGDTEIQYNYIIFRYKYIGGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136250_100000730

Overview

Ecosystem & Geography

Associated Families

Sequences