Scaffold Ga0136247_10045448

Overview

Basic Information

• Taxon OID: 3300010235
• Scaffold ID: Ga0136247_10045448
• Source Dataset Name: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale Center for Genome Analysis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 718
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021262	Metagenome / Metatranscriptome	219	N
F049316	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136247_100454481	F049316	AGGAGG	MDKDKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSKVNEFSDKLYWQYKIDNPHIFTAVQFGNLSNAAVMIAEAVKQLPQEPEAQKLIDEGMRLISILSK*
Ga0136247_100454482	F021262	N/A	CSYIQKTKGAKMSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRNYAKLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMIMEFKEVK*