NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136247_10025878

Scaffold Ga0136247_10025878


Overview

Basic Information
Taxon OID3300010235 Open in IMG/M
Scaffold IDGa0136247_10025878 Open in IMG/M
Source Dataset NameTerrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1079
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027161Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0136247_100258781F027161GGAGGMVMNEYIKLILENLNISYVCSVMLIGYIFTKSKLISKLKIQKRWLILLIGLLVAVFYYFVIKINLDILFFSFITAQFLNLYVAEFIIDYFIKKIKKLTEKS*

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