NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136247_10006486

Scaffold Ga0136247_10006486


Overview

Basic Information
Taxon OID3300010235 Open in IMG/M
Scaffold IDGa0136247_10006486 Open in IMG/M
Source Dataset NameTerrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2913
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025288Metagenome / Metatranscriptome202N
F031475Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0136247_100064863F025288N/AMKNKWIWITLMVIVIFGLIAGAGALGYQVGLRSANALAPQTDEDRALPRQLMPWLRNAPDGGIIRRPTGFIGYFFLFPLGLLLRLAILVLVVWLVVKVAKAAWNGGNHKSKPAEAVITQTPEKTPEAMVSAAPPEETAPPSEAPQGGEK*
Ga0136247_100064864F031475GGAMGANTSDSSQDSLNANPQKQREKLTQLDFLTLEMMGTSLEELRELLDEEELQAYFAFLRRQSSDLDSTSP*

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