Scaffold Ga0136247_10006486

Overview

Basic Information

• Taxon OID: 3300010235
• Scaffold ID: Ga0136247_10006486
• Source Dataset Name: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale Center for Genome Analysis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025288	Metagenome / Metatranscriptome	202	N
F031475	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136247_100064863	F025288	N/A	MKNKWIWITLMVIVIFGLIAGAGALGYQVGLRSANALAPQTDEDRALPRQLMPWLRNAPDGGIIRRPTGFIGYFFLFPLGLLLRLAILVLVVWLVVKVAKAAWNGGNHKSKPAEAVITQTPEKTPEAMVSAAPPEETAPPSEAPQGGEK*
Ga0136247_100064864	F031475	GGA	MGANTSDSSQDSLNANPQKQREKLTQLDFLTLEMMGTSLEELRELLDEEELQAYFAFLRRQSSDLDSTSP*