Scaffold Ga0136247_10003464

Overview

Basic Information

• Taxon OID: 3300010235
• Scaffold ID: Ga0136247_10003464
• Source Dataset Name: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale Center for Genome Analysis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4318
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024777	Metagenome / Metatranscriptome	204	Y
F047964	Metagenome / Metatranscriptome	149	N
F058560	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136247_1000346410	F024777	N/A	MKRVKMDAELIFAEDVEVCPKCGSSEFWENRIIWVGDDPTDEELASIECKRCGAVFYARDYYRRRFGKLEDDDEEIPF*
Ga0136247_1000346412	F058560	AGG	MGKSDVRCPKCGKTANEVELIYPRTDEQEERRERAFICQSCLYVFGESDVENNNYSFRNESLV*
Ga0136247_100034642	F047964	AGCAG	MEEMMTSKKEMAIILNKIAAVFGKEIDEKLVSVYHLVLKNYPRMALADAAMLCVQENNFMPRPKDLVEKIEKYDLERKWQFVEPSMEKTYWVLFREEYESTDDISEAECREIFGEEYVGAPKVKKVSQTKNMSDEERRNEFRKLYQESKNVSQN*