Scaffold Ga0136447_1026171

Overview

Basic Information

• Taxon OID: 3300010232
• Scaffold ID: Ga0136447_1026171
• Source Dataset Name: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2016. Combined Assembly of Gp0154194 and Gp0154467
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3838
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Source Dataset Sampling Location

• Location Name: Salar Grande, Atacama desert, Chile
• Coordinates
  • Lat. (^o): -21.0011111
  • Long. (^o): -70.07138889
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027696	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136447_10261711	F027696	GGAG	MSTTQLTQVATNIDEFEVNGDRAIDFDIAANTDYEIQSCVVVDENGRVVEAAVRFGRVKERSELGIGKPILASAWAKMVSEATDAEAVEGDLSDFGHIVPHLRIQRENVEEYGLETLSLKEFASVVAE