3300010232: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2016. Combined Assembly of Gp0154194 and Gp0154467

Overview

Basic Information

• IMG/M Taxon OID: 3300010232
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121442 | Gp0154194 | Ga0136447
• Sample Name: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2016. Combined Assembly of Gp0154194 and Gp0154467
• Sequencing Status: Permanent Draft
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 422160679
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloplanus → unclassified Haloplanus → Haloplanus sp. GDY1	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Halite Endoliths Microbial Communities Diversity Study
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Salar Grande, Atacama desert, Chile
• Coordinates
  • Lat. (^o): -21.0011111
  • Long. (^o): -70.07138889
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F027696	Metagenome	194	N
F098766	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136447_1010436	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloplanus → unclassified Haloplanus → Haloplanus sp. GDY1	7589
Ga0136447_1026171	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	3838
Ga0136447_1027279	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	3708
Ga0136447_1040560	Not Available	2669
Ga0136447_1095011	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1246

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136447_1010436	Ga0136447_10104366	F003128	MQIEIQPSDIKSGKKADERGRITLGADYAEQTVTVAVLDVDEEDE*
Ga0136447_1026171	Ga0136447_10261711	F027696	MSTTQLTQVATNIDEFEVNGDRAIDFDIAANTDYEIQSCVVVDENGRVVEAAVRFGRVKERSELGIGKPILASAWAKMVSEATDAEAVEGDLSDFGHIVPHLRIQRENVEEYGLETLSLKEFASVVAE
Ga0136447_1027279	Ga0136447_10272791	F098766	MSHPTCAICGREADGAEHIKVEVERVPPEERAKIYYFHPRCFDNSQSWERGL*
Ga0136447_1040560	Ga0136447_10405602	F003128	MKVEVSASDIEERTADGRGRITIGSEYADKIVTVAVLDVDEEGSDE*
Ga0136447_1095011	Ga0136447_10950113	F098766	MTAPCGICGRQVAGEDHVKVEVERIPPEERPKTYYFHPRCFDRAQSWEREI*