Scaffold Ga0136269_1004125

Overview

Basic Information

• Taxon OID: 3300010228
• Scaffold ID: Ga0136269_1004125
• Source Dataset Name: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter → unclassified Candidatus Sulfomarinibacter → Candidatus Sulfomarinibacter sp. MAG AM1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Source Dataset Sampling Location

• Location Name: Bangor, North Wales, UK
• Coordinates
  • Lat. (^o): 53.23
  • Long. (^o): -4.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064731	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136269_10041251	F064731	AGGAGG	MSSFRRVALFLSILAFVAPFSPAADFEADTNGPWINVDVIDLADYGDATYLDYLGEGYVAMLDALMSEEMILDYGVMMKTTGSTSDGDVVVWWSVKSLADYEKALERMGTLAGELWTEGELAELWPKLEKVRTIKSSNLXXXXLYRAVLWNKVAE*