Scaffold Ga0136257_138019

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136257_138019

Scaffold Ga0136257_138019

Overview

Basic Information
Taxon OID	3300010222 Open in IMG/M
Scaffold ID	Ga0136257_138019 Open in IMG/M
Source Dataset Name	Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1207
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Source Dataset Sampling Location
Location Name	Salar Grande, Atacama desert, Chile
Coordinates	Lat. (^o)	-21.0011111	Long. (^o)	-70.07138889	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098766	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136257_1380194	F098766	GGAGG	MTAPCGICGRQVTGEDHVTVEVDRIPPEERPKTYYFHPRCFDRAQSWERGI*

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