3300010222: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2013

Overview

Basic Information

• IMG/M Taxon OID: 3300010222
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121442 | Gp0154191 | Ga0136257
• Sample Name: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2013
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144082123
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Halite Endoliths Microbial Communities Diversity Study
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → endolithic environment → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Salar Grande, Atacama desert, Chile
• Coordinates
  • Lat. (^o): -21.0011111
  • Long. (^o): -70.07138889
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F027696	Metagenome	194	N
F098766	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136257_100232	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex	32422
Ga0136257_132112	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1372
Ga0136257_135787	Not Available	1262
Ga0136257_138019	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1207
Ga0136257_147550	Not Available	1013

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136257_100232	Ga0136257_10023231	F003128	MKVEVSAKDIEEKKADDRGRVTLGSEYSDKTVTVAVLEVEEK*
Ga0136257_132112	Ga0136257_1321123	F027696	MSTTQLNTVAANLDISEHDGERVIDFDIAANTDYEIQSCVMVDEDNRVVEAAVRFGRVEERDHLGIGKPILASAWSNMVSKVTGAEAVEGDLSDFSHIVPHLRVHRENVEEYGLETLSLD
Ga0136257_135787	Ga0136257_1357872	F003128	MKIEVSATDIEELKADDRGRVTLGLEHAHKTVTIAVLEVGEE*
Ga0136257_138019	Ga0136257_1380194	F098766	MTAPCGICGRQVTGEDHVTVEVDRIPPEERPKTYYFHPRCFDRAQSWERGI*
Ga0136257_147550	Ga0136257_1475503	F003128	MQVEVSATEVEELKADDRGRVTLGAEFADETVTVAVLDVDGDESGD*