Scaffold Ga0136271_100083

Overview

Basic Information

• Taxon OID: 3300010216
• Scaffold ID: Ga0136271_100083
• Source Dataset Name: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23576
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Source Dataset Sampling Location

• Location Name: Bangor, North Wales, UK
• Coordinates
  • Lat. (^o): 53.23
  • Long. (^o): -4.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103798	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136271_10008321	F103798	N/A	MSRPSPHPLDDAGLPGLQEQLALIEPHNLRRLEQPLRHGFADRSTARKGLEIAAGFAIADRLGSIRQKQGPSIGRNGYMLIVWLGSRWLQMEAPANTAIPFTQYRLLHDFGWKDAGKPARQALKRTLLNLQEARWEGEVNDAVTGRKTHEDHFGIIDRVMWPITSNGRVERPGFVFLGSWFLEQLRNEAGEWLDWDIVRDLPPIARKFYGMLENDRFNPRDAGAEWQTYNLASPLFVSLGSACRRERDNVAAVMRACEAIQSLDPRYRFSRERVLDARGGWVNQVLVTRVPRPRGSRRATGRRTVSPQAG*