Scaffold Ga0136458_103856

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136458_103856

Scaffold Ga0136458_103856

Overview

Basic Information
Taxon OID	3300010203 Open in IMG/M
Scaffold ID	Ga0136458_103856 Open in IMG/M
Source Dataset Name	Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCF6TC3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1251
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Littoral → Phototrophic Microbial Communities

Source Dataset Sampling Location
Location Name	Lake Waban, Wellesley MA
Coordinates	Lat. (^o)	42.2876	Long. (^o)	-71.30117	Alt. (m)		Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017253	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136458_1038561	F017253	AGGA	VRIAGDSYLTAKGGSSRKAAWAEGCPPKITAADLDG*

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