Scaffold Ga0124936_1067625

Overview

Basic Information

• Taxon OID: 3300010179
• Scaffold ID: Ga0124936_1067625
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_B MetaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1330
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F081390	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0124936_10676252	F005302	AGGAGG	MSHSGVIAGLYAGNFAVEISTNNTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATITVGKREPIELTLTFLYNEDTGSAANTIFNQFQSTTPRLGVRWSPRGLVSQARAYATSNDGGATTGLGVITNVTLSTLDPSDPEPYVAMVTVRTPSLRQYTLGTNPTDLA*
Ga0124936_10676253	F004791	AGGAGG	MTTPATIYDVDAIYVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQTDLFPIRALRRVYERVLPQIFEPDAAIRARVEGLRPNVATITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAALLLKKIFDSIGDEGNE*
Ga0124936_10676254	F081390	N/A	MRRDQRLMPPFRAQRREMLRNAPERLTVKRVGRAVVNVPTQH*